Variant report

Variant	rs10520147
Chromosome Location	chr15:39972021-39972022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39970946..39972783-chr15:39976186..39977886,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10152903	1.00[CHB][hapmap]
rs10152951	1.00[CHB][hapmap]
rs1051442	1.00[CHB][hapmap]
rs10520141	1.00[CHB][hapmap]
rs10520143	1.00[CHB][hapmap]
rs10520146	1.00[CHB][hapmap]
rs10520148	1.00[CHB][hapmap]
rs1073675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1382443	1.00[CHB][hapmap]
rs1382444	1.00[CHB][hapmap]
rs16969167	1.00[CHB][hapmap]
rs16969487	1.00[CHB][hapmap]
rs16969491	1.00[CHB][hapmap]
rs16969547	1.00[CHB][hapmap]
rs16969662	1.00[ASN][1000 genomes]
rs16969663	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969664	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969680	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17631807	1.00[AFR][1000 genomes]
rs17633107	1.00[CHB][hapmap]
rs17633210	1.00[CHB][hapmap]
rs17705806	1.00[CHB][hapmap]
rs17706083	1.00[CHB][hapmap]
rs17706179	1.00[CHB][hapmap]
rs17717859	1.00[CHB][hapmap]
rs1994380	1.00[CHB][hapmap]
rs2129457	1.00[CHB][hapmap]
rs2228262	1.00[CHB][hapmap]
rs2228263	1.00[CHB][hapmap]
rs2411316	1.00[CHB][hapmap]
rs2618161	1.00[CHB][hapmap]
rs2618167	1.00[CHB][hapmap]
rs2664138	1.00[CHB][hapmap]
rs28625134	1.00[ASN][1000 genomes]
rs28626090	1.00[ASN][1000 genomes]
rs35275624	1.00[AFR][1000 genomes]
rs4415979	1.00[CHB][hapmap]
rs4503768	1.00[CHB][hapmap]
rs4923835	1.00[CHB][hapmap]
rs4923840	1.00[ASN][1000 genomes]
rs55674415	1.00[ASN][1000 genomes]
rs55899942	1.00[ASN][1000 genomes]
rs56862147	1.00[ASN][1000 genomes]
rs58878379	1.00[ASN][1000 genomes]
rs59628570	1.00[ASN][1000 genomes]
rs60613947	1.00[ASN][1000 genomes]
rs6492905	1.00[CHB][hapmap]
rs7172155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7173948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7179604	1.00[CHB][hapmap]
rs7181354	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7181875	1.00[ASN][1000 genomes]
rs7182423	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72727047	1.00[ASN][1000 genomes]
rs72727060	1.00[ASN][1000 genomes]
rs74008680	1.00[ASN][1000 genomes]
rs8041266	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs880270	1.00[CHB][hapmap]
rs937961	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs937962	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9972350	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39960200-39972600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:39964600-39972600	Weak transcription	HSMMtube	muscle
3	chr15:39964600-39974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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