Variant report

Variant	rs10520269
Chromosome Location	chr4:174988656-174988657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10016482	0.82[ASN][1000 genomes]
rs10018732	0.82[ASN][1000 genomes]
rs10027364	0.81[EUR][1000 genomes]
rs10520268	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13108199	0.88[EUR][1000 genomes]
rs2164378	0.84[EUR][1000 genomes]
rs2196372	0.81[EUR][1000 genomes]
rs2332800	0.89[EUR][1000 genomes]
rs28831457	0.96[EUR][1000 genomes]
rs28839916	0.90[EUR][1000 genomes]
rs4299560	0.80[CEU][hapmap]
rs4695906	0.98[EUR][1000 genomes]
rs9996330	0.96[EUR][1000 genomes]
rs9998435	0.96[EUR][1000 genomes]
rs9999168	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830155	chr4:174943809-175136483	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv508335	chr4:174961722-174995092	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv881449	chr4:174984230-175225452	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174984800-174988800	Weak transcription	Fetal Lung	lung
2	chr4:174988000-174988800	Bivalent Enhancer	Fetal Brain Male	brain
3	chr4:174988200-174989800	Enhancers	Aorta	Aorta
4	chr4:174988400-174989000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:174988600-174991200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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