Variant report

Variant	rs10520566
Chromosome Location	chr15:82354992-82354993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17352886	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4778972	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs67261534	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82351000-82355400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:82354600-82355200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr15:82354600-82355200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:82354600-82355200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:82354600-82355200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:82354600-82355400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:82354600-82355800	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:82354800-82355000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
9	chr15:82354800-82355000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:82354800-82355200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr15:82354800-82355200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr15:82354800-82355200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr15:82354800-82355200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr15:82354800-82355200	Enhancers	Brain Germinal Matrix	brain
15	chr15:82354800-82355200	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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