Variant report

Variant	rs10520710
Chromosome Location	chr15:92887994-92887995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28396192	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28477680	0.90[ASN][1000 genomes]
rs7170557	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170765	0.90[ASN][1000 genomes]
rs7182414	0.88[ASN][1000 genomes]
rs8028666	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030012	0.91[ASN][1000 genomes]
rs899527	0.88[ASN][1000 genomes]
rs899528	0.83[ASN][1000 genomes]
rs899529	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1041582	chr15:92879844-92910306	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv869844	chr15:92881526-92935448	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92885600-92889200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92885800-92891800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:92886000-92888000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr15:92886000-92888800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:92886200-92888800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr15:92886600-92888800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr15:92886600-92888800	Enhancers	Fetal Brain Male	brain
8	chr15:92886800-92888000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr15:92886800-92888200	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr15:92886800-92888400	Bivalent Enhancer	Brain Substantia Nigra	brain
11	chr15:92886800-92888600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr15:92887000-92888000	Enhancers	Colon Smooth Muscle	Colon
13	chr15:92887000-92888000	Enhancers	Left Ventricle	heart
14	chr15:92887000-92888200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:92887000-92888200	Bivalent Enhancer	Brain Anterior Caudate	brain
16	chr15:92887000-92888400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr15:92887000-92888400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr15:92887000-92888400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr15:92887000-92888400	Enhancers	Right Ventricle	heart
20	chr15:92887000-92888600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr15:92887000-92888600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
22	chr15:92887000-92890600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:92887200-92888000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
24	chr15:92887200-92888200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:92887200-92888200	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr15:92887400-92888000	Flanking Active TSS	Fetal Brain Female	brain
27	chr15:92887400-92888200	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:92887400-92888200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr15:92887600-92888400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr15:92887600-92888400	Bivalent Enhancer	Brain Angular Gyrus	brain
31	chr15:92887600-92888400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
32	chr15:92887600-92888600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:92887800-92888200	Bivalent Enhancer	Brain Hippocampus Middle	brain
34	chr15:92887800-92888200	Weak transcription	Right Atrium	heart
35	chr15:92887800-92888400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:92887800-92888400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
37	chr15:92887800-92888600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:92887800-92888600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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