Variant report

Variant	rs1053924
Chromosome Location	chr6:32120715-32120716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCC1	chr6:32120325-32122905	Hela-S3	cervix:	n/a	n/a
2	JUND	chr6:32120617-32123063	SK-N-SH	brain:	n/a	chr6:32121238-32121249
3	POLR2A	chr6:32120690-32122747	K562	blood:	n/a	n/a
4	POLR2A	chr6:32120299-32122815	K562	blood:	n/a	n/a
5	RCOR1	chr6:32119876-32121274	K562	blood:	n/a	n/a
6	POLR2A	chr6:32120702-32122685	K562	blood:	n/a	n/a
7	MAX	chr6:32120688-32122917	HepG2	liver:	n/a	chr6:32122674-32122683
8	EGR1	chr6:32120383-32120806	K562	blood:	n/a	chr6:32120520-32120535
9	MXI1	chr6:32120533-32123084	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr6:32120566-32123138	K562	blood:	n/a	n/a
11	POLR2A	chr6:32119917-32123405	K562	blood:	n/a	n/a
12	PML	chr6:32120536-32122619	K562	blood:	n/a	chr6:32121853-32121861
13	EP300	chr6:32120458-32122668	K562	blood:	n/a	chr6:32122616-32122630
14	CREB1	chr6:32120599-32122833	K562	blood:	n/a	n/a
15	MAZ	chr6:32119640-32123127	K562	blood:	n/a	chr6:32122674-32122683
16	POLR2A	chr6:32120689-32122306	SK-N-MC	brain:	n/a	n/a
17	CBX3	chr6:32120700-32122709	K562	blood:	n/a	n/a
18	POLR2A	chr6:32119847-32123287	K562	blood:	n/a	n/a
19	HCFC1	chr6:32120349-32122743	K562	blood:	n/a	n/a
20	EGR1	chr6:32120367-32120826	MCF-7	breast:	n/a	chr6:32120520-32120535
21	POLR2A	chr6:32120702-32120725	Hela-S3	cervix:	n/a	n/a
22	HCFC1	chr6:32120584-32122833	Hela-S3	cervix:	n/a	n/a
23	GATA1	chr6:32120706-32123154	PBDE	blood:	n/a	chr6:32121037-32121047 chr6:32123010-32123017 chr6:32121031-32121052 chr6:32122992-32123000 chr6:32123010-32123019 chr6:32121038-32121045 chr6:32121034-32121050 chr6:32123009-32123019 chr6:32121035-32121045 chr6:32121038-32121047
24	CREB1	chr6:32120687-32122818	K562	blood:	n/a	n/a
25	TAF1	chr6:32120686-32122715	K562	blood:	n/a	n/a
26	HEY1	chr6:32120686-32122670	K562	blood:	n/a	n/a
27	UBTF	chr6:32120616-32122901	K562	blood:	n/a	n/a
28	POLR2A	chr6:32120661-32122940	H1-hESC	embryonic stem cell:	n/a	n/a
29	MXI1	chr6:32120685-32123356	IMR90	lung:	n/a	n/a
30	EGR1	chr6:32120290-32120931	MCF-7	breast:	n/a	chr6:32120320-32120327 chr6:32120520-32120535
31	ZMIZ1	chr6:32120342-32123281	K562	blood:	n/a	n/a
32	NR2F2	chr6:32120688-32121368	K562	blood:	n/a	n/a
33	UBTF	chr6:32120706-32122611	K562	blood:	n/a	n/a
34	POLR2A	chr6:32120713-32122660	K562	blood:	n/a	n/a
35	POLR2A	chr6:32120626-32122859	K562	blood:	n/a	n/a
36	KAP1	chr6:32120670-32122537	HEK293	kidney:	n/a	chr6:32121853-32121861
37	POLR2A	chr6:32120675-32122727	K562	blood:	n/a	n/a
38	POLR2A	chr6:32120610-32122763	IMR90	lung:	n/a	n/a
39	YY1	chr6:32120654-32121048	K562	blood:	n/a	n/a
40	POLR2A	chr6:32120643-32122896	K562	blood:	n/a	n/a
41	TFAP2A	chr6:32120714-32121997	Hela-S3	cervix:	n/a	chr6:32121091-32121106 chr6:32121092-32121103 chr6:32121092-32121103 chr6:32121092-32121103 chr6:32121091-32121105 chr6:32121092-32121103
42	ZNF384	chr6:32120324-32121205	K562	blood:	n/a	n/a
43	CUX1	chr6:32120574-32122669	K562	blood:	n/a	n/a
44	TEAD4	chr6:32119924-32122767	K562	blood:	n/a	n/a
45	IRF1	chr6:32120584-32122616	K562	blood:	n/a	n/a
46	JUN	chr6:32119585-32123529	K562	blood:	n/a	n/a
47	ZC3H11A	chr6:32120317-32121377	K562	blood:	n/a	n/a
48	MAX	chr6:32120672-32123254	HepG2	liver:	n/a	chr6:32122674-32122683
49	RAD21	chr6:32120645-32123084	SK-N-SH	brain:	n/a	chr6:32122739-32122753 chr6:32122560-32122570 chr6:32122662-32122676
50	JUND	chr6:32119912-32123046	K562	blood:	n/a	chr6:32121238-32121249

No.	Distal block	Cell Line	Cell type
1	chr6:32092991..32098157-chr6:32120638..32123369,8	MCF-7	breast:
2	chr6:32120171..32123942-chr6:32124306..32127652,6	K562	blood:
3	chr6:32119715..32123835-chr6:32132075..32139187,7	MCF-7	breast:
4	chr6:32093127..32099788-chr6:32117635..32125818,23	K562	blood:
5	chr6:32075391..32078384-chr6:32120601..32122680,2	K562	blood:
6	chr6:32120281..32121979-chr6:32162603..32165254,2	MCF-7	breast:
7	chr6:32119953..32121978-chr6:32160445..32163462,3	MCF-7	breast:
8	chr6:32119236..32123483-chr6:32143856..32148114,6	MCF-7	breast:
9	chr6:32093545..32101236-chr6:32120105..32124952,17	MCF-7	breast:
10	chr6:32117996..32123374-chr6:32143500..32146983,4	MCF-7	breast:
11	chr6:32116953..32128256-chr6:32128373..32148325,54	K562	blood:
12	chr6:31938655..31941642-chr6:32120425..32122384,2	K562	blood:
13	chr6:32082980..32086788-chr6:32120307..32122221,3	MCF-7	breast:
14	chr6:32112269..32118612-chr6:32118921..32122909,10	MCF-7	breast:
15	chr6:32120233..32126271-chr6:32158822..32166984,18	K562	blood:
16	chr6:32093775..32101330-chr6:32116233..32126080,28	K562	blood:
17	chr6:32085563..32088758-chr6:32119743..32123007,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGPAT1-1	chr6:32120579-32121436	NONHSAT108884
2	lnc-AGPAT1-1	chr6:32120579-32120949	NONHSAT108886
3	lnc-AGPAT1-1	chr6:32120579-32120949	NONHSAT108885
4	lnc-AGPAT1-1	chr6:32120579-32120949	NONHSAT108883
5	lnc-AGPAT1-1	chr6:32120579-32121436	NONHSAT108882

Variant related genes	Relation type
PPT2-EGFL8	TF binding region
PPT2	TF binding region
PRRT1	TF binding region
ENSG00000204315	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204308	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000241404	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1061808	0.95[ASN][1000 genomes]
rs3130293	0.81[EUR][1000 genomes]
rs3134950	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv884701	chr6:32089549-32130329	Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
37	nsv884703	chr6:32112559-32123448	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
38	nsv884704	chr6:32115226-32121932	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
39	nsv884705	chr6:32116313-32122476	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv884706	chr6:32116313-32146492	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1053924	HLA-DQB1	cis	lymphoblastoid	seeQTL
rs1053924	HLA-C	cis	lymphoblastoid	GTEx
rs1053924	HLA-DRB1	cis	lymphoblastoid	seeQTL
rs1053924	CCHCR1	cis	lymphoblastoid	seeQTL
rs1053924	HLA-DQA1	cis	lymphoblastoid	GTEx
rs1053924	HLA-DQB1	cis	lymphoblastoid	GTEx
rs1053924	HLA-DRB5	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32117200-32120800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:32117200-32121200	Weak transcription	Gastric	stomach
3	chr6:32117800-32121600	Enhancers	Spleen	Spleen
4	chr6:32118400-32122800	Active TSS	Aorta	Aorta
5	chr6:32119200-32121800	Enhancers	Lung	lung
6	chr6:32119200-32122800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:32119400-32121000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:32119400-32122400	Active TSS	Left Ventricle	heart
9	chr6:32119400-32123000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:32119800-32120800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:32119800-32120800	Enhancers	HMEC	breast
12	chr6:32119800-32121200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:32119800-32121200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:32119800-32121200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:32119800-32121200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:32119800-32121400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:32119800-32121400	Flanking Active TSS	K562	blood
18	chr6:32119800-32121400	Flanking Active TSS	NH-A	brain
19	chr6:32119800-32121400	Flanking Active TSS	NHLF	lung
20	chr6:32119800-32121600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:32119800-32121800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:32119800-32121800	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:32120000-32120800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:32120000-32120800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:32120000-32120800	Enhancers	Esophagus	oesophagus
26	chr6:32120000-32120800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:32120000-32120800	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:32120000-32121000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
29	chr6:32120000-32121000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr6:32120000-32121000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:32120000-32121200	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr6:32120000-32121200	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr6:32120000-32121200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr6:32120000-32121200	Flanking Active TSS	Fetal Kidney	kidney
35	chr6:32120000-32121200	Enhancers	Pancreas	Pancrea
36	chr6:32120000-32121200	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr6:32120000-32121200	Flanking Active TSS	Osteobl	bone
38	chr6:32120000-32121400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:32120000-32121400	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr6:32120000-32121400	Bivalent Enhancer	Fetal Thymus	thymus
41	chr6:32120000-32121600	Enhancers	Liver	Liver
42	chr6:32120000-32121800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr6:32120200-32120800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:32120200-32120800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:32120200-32120800	Enhancers	Placenta	Placenta
46	chr6:32120200-32120800	Enhancers	Dnd41	blood
47	chr6:32120200-32121000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr6:32120200-32121200	Bivalent Enhancer	Thymus	Thymus
49	chr6:32120200-32121400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr6:32120200-32121400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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