Variant report

Variant	rs10544661
Chromosome Location	chr7:39055115-39055116
allele	-/ATAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3409286	chr7:39054027-39056825	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3340292	chr7:39054052-39056600	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3323078	chr7:39054527-39056375	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3369785	chr7:39055025-39055277	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv358810	chr7:39055115-39055118	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39053200-39056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39053400-39056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:39053600-39056400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:39053600-39056400	Weak transcription	Placenta	Placenta
5	chr7:39054200-39056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:39054200-39057000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:39054200-39062000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:39054400-39056400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:39054600-39056200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:39054600-39056400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:39054600-39056400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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