Variant report

Variant	rs10550157
Chromosome Location	chr19:42308324-42308325
allele	-/CC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2568775	chr19:42307141-42308663	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3351362	chr19:42307636-42311347	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1779882	chr19:42308323-42308325	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2615813	chr19:42308324-42308325	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv137416	chr19:42308324-42308325	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2282582	chr19:42308324-42308326	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42304800-42316800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr19:42305000-42309000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:42305000-42310000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr19:42305200-42308800	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:42307000-42308400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr19:42307000-42313600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:42307000-42314600	Weak transcription	Fetal Thymus	thymus
8	chr19:42307200-42309200	Enhancers	Primary hematopoietic stem cells	blood
9	chr19:42307200-42310000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr19:42307800-42309600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr19:42307800-42310200	Enhancers	Primary B cells from cord blood	blood
12	chr19:42308200-42308400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:42308200-42308800	Enhancers	GM12878-XiMat	blood
14	chr19:42308200-42309000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr19:42308200-42309000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr19:42308200-42309200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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