Variant report

Variant	rs1055356
Chromosome Location	chr15:35148102-35148103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11635293	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11637397	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12102243	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591523	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593508	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12594365	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12911447	0.81[EUR][1000 genomes]
rs1402860	0.91[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs17237170	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17237191	0.89[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34185281	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1055356	TMPRSS3	trans	lymphoblastoid	seeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35141600-35154800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:35141800-35153400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:35142600-35149000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:35142600-35149000	Weak transcription	Fetal Intestine Small	intestine
6	chr15:35142600-35149400	Weak transcription	Pancreas	Pancrea
7	chr15:35142600-35153400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:35142600-35156400	Weak transcription	Lung	lung
9	chr15:35142600-35180200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:35142600-35185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:35144800-35148600	Enhancers	Fetal Heart	heart
12	chr15:35145000-35155400	Strong transcription	Primary T cells from cord blood	blood
13	chr15:35145200-35149000	Weak transcription	Right Atrium	heart
14	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
15	chr15:35145600-35148200	Weak transcription	Fetal Kidney	kidney
16	chr15:35145600-35152000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:35145600-35161200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:35145600-35184600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:35145800-35148200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:35145800-35148200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:35145800-35148200	Weak transcription	Fetal Stomach	stomach
22	chr15:35145800-35148200	Weak transcription	Spleen	Spleen
23	chr15:35145800-35153000	Weak transcription	Left Ventricle	heart
24	chr15:35145800-35185400	Weak transcription	Psoas Muscle	Psoas
25	chr15:35146000-35149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:35146200-35148200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:35146400-35156600	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr15:35146400-35175400	Weak transcription	Small Intestine	intestine
29	chr15:35146600-35148200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:35146600-35150000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:35146600-35150400	Strong transcription	Fetal Intestine Large	intestine
32	chr15:35146600-35155600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:35146600-35160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:35146600-35160800	Strong transcription	Primary B cells from cord blood	blood
35	chr15:35146600-35184800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:35146600-35185200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:35146800-35148200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:35146800-35148400	Enhancers	Brain Germinal Matrix	brain
39	chr15:35146800-35148400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr15:35146800-35148600	Genic enhancers	Liver	Liver
41	chr15:35146800-35148800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:35146800-35149200	Strong transcription	Fetal Thymus	thymus
43	chr15:35146800-35149400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:35146800-35149600	Strong transcription	K562	blood
45	chr15:35146800-35155200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:35146800-35158000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:35146800-35159000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr15:35146800-35161200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:35146800-35183200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:35146800-35185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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