Variant report

Variant	rs10557724
Chromosome Location	chr2:172746215-172746216
allele	-/CT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172745241..172748938-chr2:172777169..172782251,7	K562	blood:
2	chr2:172744693..172746418-chr2:172748270..172750785,2	MCF-7	breast:
3	chr2:172744007..172746435-chr2:172749737..172751670,2	MCF-7	breast:
4	chr2:172744912..172747525-chr2:172966003..172969811,3	K562	blood:
5	chr2:172720314..172722919-chr2:172744324..172746947,2	K562	blood:

Variant related genes	Relation type
ENSG00000115840	Chromatin interaction
ENSG00000115844	Chromatin interaction
ENSG00000128708	Chromatin interaction
ENSG00000236651	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv583611	chr2:172683481-172750257	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1006214	chr2:172691689-172754296	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv536036	chr2:172691689-172754296	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv875410	chr2:172693780-172896587	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875411	chr2:172693780-172942448	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv536037	chr2:172745597-172780616	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	esv1717222	chr2:172746214-172746216	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv2599088	chr2:172746215-172746216	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1960396	chr2:172746215-172746217	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172690200-172750200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:172709600-172749600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:172709600-172749600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:172710800-172747800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:172712200-172749200	Weak transcription	Hela-S3	cervix
6	chr2:172721200-172749600	Weak transcription	Thymus	Thymus
7	chr2:172724000-172749600	Weak transcription	Small Intestine	intestine
8	chr2:172724800-172749600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:172725400-172749800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:172725800-172749600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:172731400-172746400	Weak transcription	Fetal Lung	lung
12	chr2:172731600-172749600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:172731800-172746400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:172732000-172746400	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:172732000-172746400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:172732000-172746600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:172732000-172748800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:172732000-172749400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr2:172732000-172749400	Weak transcription	A549	lung
20	chr2:172732000-172749600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:172732000-172749800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:172732000-172749800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:172732000-172750000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:172732200-172746400	Weak transcription	Primary B cells from cord blood	blood
25	chr2:172732200-172749600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:172732400-172749600	Weak transcription	Fetal Kidney	kidney
27	chr2:172732400-172749800	Weak transcription	Fetal Thymus	thymus
28	chr2:172732600-172747000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:172733000-172746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:172733000-172749200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:172733000-172749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:172735200-172749600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:172735400-172746600	Weak transcription	HSMM	muscle
34	chr2:172735400-172748200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:172735400-172748400	Weak transcription	Brain Anterior Caudate	brain
36	chr2:172735400-172749400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:172735400-172749400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr2:172735400-172749400	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:172735400-172749600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr2:172735400-172749600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr2:172735400-172749600	Weak transcription	NHDF-Ad	bronchial
42	chr2:172735400-172749600	Weak transcription	NHEK	skin
43	chr2:172735600-172746400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:172735600-172749600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:172735600-172749600	Weak transcription	Adipose Nuclei	Adipose
46	chr2:172735600-172749600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr2:172735600-172749600	Weak transcription	Brain Substantia Nigra	brain
48	chr2:172735600-172749600	Weak transcription	HMEC	breast
49	chr2:172735600-172749600	Weak transcription	NHLF	lung
50	chr2:172735600-172750000	Weak transcription	Aorta	Aorta

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