Variant report

Variant	rs1059440
Chromosome Location	chr11:63991801-63991802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:63989232-63995299	K562	blood:	n/a	n/a
2	FOS	chr11:63991549-63991883	MCF10A-Er-Src	breast:	n/a	chr11:63991702-63991711 chr11:63991706-63991713
3	POLR2A	chr11:63989880-63995323	GM12891	blood:	n/a	n/a
4	POLR2A	chr11:63991338-63994677	GM12891	blood:	n/a	n/a
5	POLR2A	chr11:63991343-63995010	U87	brain:	n/a	n/a
6	MTA3	chr11:63991287-63995175	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:63991349-63994680	GM12891	blood:	n/a	n/a
8	CEBPB	chr11:63991659-63991883	Hela-S3	cervix:	n/a	chr11:63991790-63991801
9	POLR2A	chr11:63991516-63995277	Raji	blood:	n/a	n/a
10	POLR2A	chr11:63991337-63995010	U87	brain:	n/a	n/a
11	POLR2A	chr11:63991399-63994678	GM12878	blood:	n/a	n/a
12	POLR2A	chr11:63990418-63994603	GM12878	blood:	n/a	n/a
13	POLR2A	chr11:63989946-63994682	HL-60	blood:	n/a	n/a
14	POLR2A	chr11:63991655-63991829	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr11:63991751-63993094	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr11:63990068-63995245	GM18505	blood:	n/a	n/a
17	POLR2A	chr11:63991705-63992240	A549	lung:	n/a	n/a
18	POLR2A	chr11:63989981-63995376	GM12892	blood:	n/a	n/a
19	POLR2A	chr11:63991347-63994715	GM12892	blood:	n/a	n/a
20	STAT3	chr11:63991597-63991855	MCF10A-Er-Src	breast:	n/a	n/a
21	ELF1	chr11:63991792-63992502	GM12878	blood:	n/a	n/a
22	CEBPB	chr11:63991635-63991944	IMR90	lung:	n/a	chr11:63991790-63991801
23	CEBPB	chr11:63991734-63991921	K562	blood:	n/a	chr11:63991790-63991801
24	POU2F2	chr11:63991767-63992400	GM12891	blood:	n/a	n/a
25	POLR2A	chr11:63989888-63995214	K562	blood:	n/a	n/a
26	POLR2A	chr11:63991610-63992564	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr11:63989890-63992568	K562	blood:	n/a	n/a
28	POLR2A	chr11:63991363-63992202	SK-N-MC	brain:	n/a	n/a
29	MYC	chr11:63991553-63991907	MCF10A-Er-Src	breast:	n/a	chr11:63991703-63991712
30	FOS	chr11:63991549-63991875	MCF10A-Er-Src	breast:	n/a	chr11:63991702-63991711 chr11:63991706-63991713
31	POLR2A	chr11:63991478-63992287	GM12878	blood:	n/a	n/a
32	POLR2A	chr11:63990059-63994553	K562	blood:	n/a	n/a
33	CEBPB	chr11:63991643-63991916	A549	lung:	n/a	chr11:63991790-63991801
34	POLR2A	chr11:63989881-63994799	GM12878	blood:	n/a	n/a
35	POLR2A	chr11:63990003-63994887	K562	blood:	n/a	n/a
36	POLR2A	chr11:63991329-63994676	HUVEC	blood vessel:	n/a	n/a
37	NFATC1	chr11:63991460-63992428	GM12878	blood:	n/a	n/a
38	POLR2A	chr11:63991360-63992605	GM12891	blood:	n/a	n/a
39	CEBPB	chr11:63991652-63991930	HepG2	liver:	n/a	chr11:63991790-63991801
40	POLR2A	chr11:63990960-63994308	GM12892	blood:	n/a	n/a
41	POLR2A	chr11:63990076-63994151	K562	blood:	n/a	n/a
42	STAT5A	chr11:63991772-63994864	GM12878	blood:	n/a	chr11:63993231-63993243 chr11:63993237-63993249
43	POLR2A	chr11:63990163-63994910	GM12878	blood:	n/a	n/a
44	FOS	chr11:63991508-63991881	MCF10A-Er-Src	breast:	n/a	chr11:63991702-63991711 chr11:63991706-63991713
45	HEY1	chr11:63991774-63991970	K562	blood:	n/a	n/a
46	POLR2A	chr11:63989900-63994663	GM12892	blood:	n/a	n/a
47	POLR2A	chr11:63991181-63994492	HUVEC	blood vessel:	n/a	n/a
48	POLR2A	chr11:63989222-63995360	K562	blood:	n/a	n/a
49	POLR2A	chr11:63991338-63992216	U87	brain:	n/a	n/a
50	POLR2A	chr11:63991404-63994814	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:63991030..63993449-chr16:4673277..4676059,2	K562	blood:
2	chr11:63990938..63995618-chr11:64068467..64075569,11	MCF-7	breast:
3	chr11:63951654..63956341-chr11:63991514..63996131,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP1R14B-2	chr11:63991757-63991963	NONHSAT021955

Variant related genes	Relation type
NUDT22	TF binding region
ENSG00000173153	Chromatin interaction
ENSG00000102858	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000168439	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1058735	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11231701	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11600867	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11601024	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11601577	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11602181	1.00[ASW][hapmap];0.93[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11603042	0.88[CHB][hapmap]
rs11603212	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11605738	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11606544	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11607007	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11607144	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607165	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418035	0.88[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs12574258	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12575642	1.00[ASW][hapmap];0.93[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12787852	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12794145	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12797120	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12798333	0.80[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.91[LWK][hapmap];0.93[TSI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12802950	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2001003	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2015226	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2070765	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2154986	0.82[EUR][1000 genomes]
rs2282490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286614	1.00[ASW][hapmap]
rs2875749	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34089806	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34113693	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34358026	0.88[AMR][1000 genomes]
rs34838337	0.81[EUR][1000 genomes]
rs35090903	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35095324	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35458188	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35524387	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35858916	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3802933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824854	0.93[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58632573	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs604203	0.81[CHB][hapmap]
rs6591837	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66648159	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67546972	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7102327	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7111278	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7112277	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130030	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71479474	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72918475	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72920332	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72922039	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7478730	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7939784	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7944061	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7952318	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs882146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv897665	chr11:63927695-64026144	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
13	nsv897666	chr11:63929493-64026144	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
14	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
15	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
17	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
18	nsv468595	chr11:63953121-64027888	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
19	nsv555187	chr11:63953121-64027888	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
20	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
21	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
22	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
23	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
25	nsv541061	chr11:63970174-64010995	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases
26	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
27	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
28	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
29	nsv897673	chr11:63991581-64018687	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Attention deficit hyperactivity disorder	21784300	GWAS catalog

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs1059440	CD248	cis	parietal	SCAN
rs1059440	FKBP2	cis	parietal	SCAN
rs1059440	PPP1R14B	cis	Heart Left Ventricle	GTEx
rs1059440	FAM89B	cis	parietal	SCAN
rs1059440	PPP1R14B	cis	multi-tissue	Pritchard
rs1059440	PPP1R14B	Cis_1M	lymphoblastoid	RTeQTL
rs1059440	GPHA2	cis	cerebellum	SCAN
rs1059440	PRDX5	cis	parietal	SCAN
rs1059440	FAU	cis	parietal	SCAN
rs1059440	ASRGL1	cis	parietal	SCAN
rs1059440	TRPT1	cis	Muscle Skeletal	GTEx
rs1059440	SLC22A10	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63971600-63992800	Weak transcription	Fetal Kidney	kidney
2	chr11:63973600-63993000	Weak transcription	Aorta	Aorta
3	chr11:63975200-63992600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:63975600-63992400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:63975600-63992600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:63975600-63992600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:63975600-63992800	Weak transcription	Fetal Lung	lung
8	chr11:63975800-63992400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:63975800-63992600	Weak transcription	Left Ventricle	heart
10	chr11:63975800-63992600	Weak transcription	Osteobl	bone
11	chr11:63975800-63993000	Weak transcription	Small Intestine	intestine
12	chr11:63976200-63992400	Strong transcription	Fetal Intestine Small	intestine
13	chr11:63976400-63992800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:63976600-63992600	Weak transcription	HUVEC	blood vessel
15	chr11:63976800-63992800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:63977400-63992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:63977400-63992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:63977400-63992200	Strong transcription	Fetal Thymus	thymus
19	chr11:63979800-63992600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:63982200-63992400	Strong transcription	Thymus	Thymus
21	chr11:63983000-63992400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:63983200-63992400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:63985000-63992000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:63986200-63992000	Strong transcription	Fetal Intestine Large	intestine
25	chr11:63986400-63992200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:63986800-63992400	Strong transcription	Fetal Stomach	stomach
27	chr11:63987800-63992400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:63988200-63992600	Genic enhancers	Fetal Muscle Leg	muscle
29	chr11:63988400-63992000	Weak transcription	HepG2	liver
30	chr11:63988600-63992400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:63988600-63992400	Weak transcription	Fetal Brain Female	brain
32	chr11:63988600-63992600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:63988600-63992600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:63988600-63992600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:63988600-63992800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:63988800-63992000	Weak transcription	HSMMtube	muscle
37	chr11:63988800-63992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:63988800-63992400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:63988800-63992600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:63988800-63992800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:63988800-63992800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:63988800-63993000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:63989000-63992200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:63989000-63992400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:63989000-63992600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:63989000-63992600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:63989800-63992600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:63990000-63992600	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr11:63990000-63993000	Genic enhancers	Spleen	Spleen
50	chr11:63990200-63992000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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