Variant report

Variant	rs1061310
Chromosome Location	chr5:44820850-44820851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:44818219..44821058-chr5:44821890..44824873,2	MCF-7	breast:
2	chr5:44808765..44814014-chr5:44819023..44823010,7	MCF-7	breast:
3	chr5:44819705..44824396-chr5:44829069..44835270,7	K562	blood:

Variant related genes	Relation type
ENSG00000112996	Chromatin interaction
ENSG00000251141	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10038562	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040082	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10040488	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10041518	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10044096	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10045264	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054773	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10057521	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10059086	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10060878	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10063172	0.81[ASN][1000 genomes]
rs10064434	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10064437	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10065638	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10069220	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10070037	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10072025	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10072259	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10462080	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10462081	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10462082	0.93[ASN][1000 genomes]
rs10462083	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10473376	0.81[ASN][1000 genomes]
rs10473377	0.81[ASN][1000 genomes]
rs1048758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10512865	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11741772	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746506	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746980	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11747159	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11750119	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11948387	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948636	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11949847	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11951760	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11957920	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11958451	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11958808	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12109710	0.81[ASN][1000 genomes]
rs12188871	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513749	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12517690	0.80[ASN][1000 genomes]
rs12518851	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651949	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652026	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12656984	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13154781	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13155698	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13157608	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13159598	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160259	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13168400	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13174122	0.82[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13177711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13183209	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13185174	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13187933	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13189120	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371023	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1371024	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1371025	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1438819	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438822	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1438827	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16901963	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16901964	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16901965	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16901989	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16901990	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1821934	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866406	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2013513	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2083243	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2118764	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2165008	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2218080	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs2218081	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2330572	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2330619	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2330620	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877172	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34501299	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3747479	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3761648	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3761649	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3761650	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129642	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4329028	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4395640	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4412123	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457088	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4457089	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4518409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4596389	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4642377	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866783	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4866784	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866920	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57300972	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451772	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451774	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451775	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451781	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67274820	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6859157	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6867533	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6868232	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6868779	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6870136	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6871820	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6872254	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6875933	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881563	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6894324	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6896350	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6896417	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714130	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs71610376	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727304	0.91[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs727305	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729599	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7380559	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7449277	0.91[ASN][1000 genomes]
rs7703059	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703618	0.81[EUR][1000 genomes]
rs7705343	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7708506	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7710952	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710978	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7711136	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711697	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7712949	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7715731	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7716571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717459	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728431	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7730841	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736952	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737491	0.91[ASN][1000 genomes]
rs920329	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs9292913	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9292914	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9292915	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs930394	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9637783	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9637796	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9637797	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969679	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790879	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9790896	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9791056	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791059	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9791164	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs987394	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830279	chr5:44688175-44860815	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv880712	chr5:44777878-44842260	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv881564	chr5:44783255-44914579	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv881629	chr5:44796042-44836788	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv881184	chr5:44796042-44842260	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv881280	chr5:44800665-44821736	Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
8	nsv880618	chr5:44800665-44836788	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv881418	chr5:44800665-44869100	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv880397	chr5:44800665-44939293	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv462127	chr5:44803749-44834233	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv597934	chr5:44803749-44834233	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv880838	chr5:44805926-44836788	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv881498	chr5:44805926-44842260	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1061310	LOC647121	Cis_chr	lymphoblastoid	RTeQTL
rs1061310	RP11-53O19.3	cis	Nerve Tibial	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44810000-44828000	Weak transcription	Gastric	stomach
2	chr5:44810000-44839000	Weak transcription	Pancreas	Pancrea
3	chr5:44810200-44837600	Weak transcription	Esophagus	oesophagus
4	chr5:44810400-44822400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:44810800-44821600	Weak transcription	Colonic Mucosa	Colon
6	chr5:44810800-44822400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:44810800-44822800	Weak transcription	Thymus	Thymus
8	chr5:44810800-44828000	Weak transcription	Right Ventricle	heart
9	chr5:44810800-44829400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:44810800-44832200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:44810800-44833000	Weak transcription	Psoas Muscle	Psoas
12	chr5:44810800-44835800	Weak transcription	Aorta	Aorta
13	chr5:44811000-44823000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:44811000-44829400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:44811200-44821400	Strong transcription	Fetal Intestine Large	intestine
16	chr5:44811200-44823000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr5:44811200-44835400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:44811400-44823000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:44811400-44838400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:44811600-44822800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:44811600-44823200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:44811800-44822800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:44811800-44823000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:44811800-44823000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:44811800-44823200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr5:44811800-44823400	Strong transcription	Primary B cells from cord blood	blood
27	chr5:44811800-44823600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:44811800-44824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:44811800-44824600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:44812000-44824600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:44812200-44822800	Strong transcription	A549	lung
32	chr5:44812200-44824600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:44812400-44822600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:44812400-44823200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:44812400-44825800	Weak transcription	Fetal Brain Male	brain
36	chr5:44812800-44821000	Strong transcription	K562	blood
37	chr5:44813000-44821000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr5:44813200-44821400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:44813400-44821000	Strong transcription	GM12878-XiMat	blood
40	chr5:44813400-44822600	Strong transcription	Dnd41	blood
41	chr5:44813800-44824600	Strong transcription	Hela-S3	cervix
42	chr5:44814200-44825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:44814200-44829400	Weak transcription	Brain Germinal Matrix	brain
44	chr5:44814800-44822000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:44814800-44822400	Strong transcription	Primary T cells from cord blood	blood
46	chr5:44814800-44839200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:44815000-44826200	Weak transcription	Brain Angular Gyrus	brain
48	chr5:44815000-44832800	Weak transcription	Brain Hippocampus Middle	brain
49	chr5:44815200-44821200	Weak transcription	NHEK	skin
50	chr5:44815200-44822200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links