Variant report

Variant	rs1064959
Chromosome Location	chr12:106459510-106459511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106436023..106438944-chr12:106457354..106459862,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17038091	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3741884	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73193841	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452200-106460000	Weak transcription	Placenta	Placenta
2	chr12:106452200-106460600	Weak transcription	NHLF	lung
3	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
4	chr12:106452800-106460000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:106452800-106460000	Weak transcription	Lung	lung
6	chr12:106452800-106463600	Weak transcription	NHDF-Ad	bronchial
7	chr12:106452800-106472200	Weak transcription	HMEC	breast
8	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:106453000-106460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:106453200-106460200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:106454000-106463400	Weak transcription	Fetal Brain Male	brain
12	chr12:106455200-106460000	Strong transcription	HSMM	muscle
13	chr12:106456200-106459800	Weak transcription	Fetal Stomach	stomach
14	chr12:106456200-106460200	Weak transcription	Ovary	ovary
15	chr12:106456400-106460600	Weak transcription	Gastric	stomach
16	chr12:106456400-106461200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:106456400-106461200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:106456400-106461600	Weak transcription	Fetal Heart	heart
19	chr12:106456400-106465200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:106456400-106465400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:106456400-106468000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:106456600-106460800	Weak transcription	Pancreas	Pancrea
23	chr12:106456600-106468800	Weak transcription	Colonic Mucosa	Colon
24	chr12:106456800-106460600	Weak transcription	Fetal Intestine Small	intestine
25	chr12:106457200-106460200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:106457200-106461000	Weak transcription	Fetal Intestine Large	intestine
27	chr12:106457600-106459800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:106457600-106460000	Strong transcription	A549	lung
29	chr12:106457600-106462600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr12:106457600-106463800	Strong transcription	Liver	Liver
31	chr12:106457600-106465000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:106457600-106465000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:106457600-106465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:106457800-106461400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:106458000-106459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr12:106458000-106460200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:106458200-106459600	Weak transcription	Spleen	Spleen
38	chr12:106458200-106461000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr12:106458200-106468600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr12:106458400-106459800	Weak transcription	Right Atrium	heart
42	chr12:106458400-106461400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr12:106458400-106462600	Strong transcription	Brain Anterior Caudate	brain
44	chr12:106458400-106463200	Weak transcription	Fetal Kidney	kidney
45	chr12:106458400-106464600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:106458400-106465200	Strong transcription	Brain Germinal Matrix	brain
47	chr12:106458400-106465200	Strong transcription	Brain Hippocampus Middle	brain
48	chr12:106458400-106468600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr12:106458600-106460600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr12:106458600-106461600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links