Variant report

Variant	rs10678623
Chromosome Location	chr3:59843257-59843258
allele	-/TTAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59560849..59562291-chr3:59843175..59844082,5	MCF-7	breast:
2	chr3:59593238..59594045-chr3:59842694..59843779,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59827200-59843400	Weak transcription	Dnd41	blood
2	chr3:59834000-59848000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:59842400-59843400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:59842600-59843600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:59842600-59843800	Enhancers	Fetal Thymus	thymus
6	chr3:59842800-59843400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:59842800-59843400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:59842800-59843600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:59842800-59843600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:59842800-59843600	Enhancers	Fetal Intestine Small	intestine
11	chr3:59842800-59843800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:59842800-59844000	Enhancers	Primary T cells from cord blood	blood
13	chr3:59842800-59844000	Enhancers	Thymus	Thymus
14	chr3:59843000-59843600	Enhancers	Fetal Heart	heart
15	chr3:59843000-59843800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:59843000-59844000	Enhancers	Stomach Mucosa	stomach
17	chr3:59843000-59844600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:59843200-59843400	Enhancers	A549	lung
19	chr3:59843200-59843600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:59843200-59843600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:59843200-59843600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:59843200-59843600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:59843200-59843600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:59843200-59843600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:59843200-59843600	Enhancers	Brain Substantia Nigra	brain
26	chr3:59843200-59843600	Enhancers	Fetal Lung	lung
27	chr3:59843200-59843600	Enhancers	Osteobl	bone

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