Variant report

Variant	rs10679276
Chromosome Location	chr2:58136612-58136613
allele	-/G/GTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1040226	0.82[AMR][1000 genomes]
rs11125736	0.81[AMR][1000 genomes]
rs11895197	0.82[AMR][1000 genomes]
rs58174848	0.82[AMR][1000 genomes]
rs6711762	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs884669	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58133800-58138400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:58134400-58136800	ZNF genes & repeats	GM12878-XiMat	blood
3	chr2:58134400-58137600	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:58135400-58137600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:58135400-58138600	Weak transcription	Brain Substantia Nigra	brain
6	chr2:58136200-58136800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr2:58136200-58136800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:58136400-58137400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:58136400-58137400	Weak transcription	Brain Angular Gyrus	brain
10	chr2:58136400-58137600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:58136400-58139400	Weak transcription	Brain Anterior Caudate	brain
12	chr2:58136600-58136800	Enhancers	Brain Hippocampus Middle	brain
13	chr2:58136600-58137400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:58136600-58139800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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