Variant report

Variant	rs1068945
Chromosome Location	chr12:117911581-117911582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1068944	0.94[ASN][1000 genomes]
rs1093297	0.83[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs1093313	0.88[ASN][1000 genomes]
rs816284	0.83[CHD][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1068945	ERP29	cis	parietal	SCAN
rs1068945	SDS	cis	parietal	SCAN
rs1068945	TPCN1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:117898000-117921400	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117898800-117911600	Weak transcription	HUVEC	blood vessel
4	chr12:117903200-117919600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:117905000-117923800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:117909000-117913400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr12:117909200-117919600	Weak transcription	A549	lung
8	chr12:117909200-117921400	Weak transcription	Brain Anterior Caudate	brain
9	chr12:117909200-117925200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:117909200-117925200	Weak transcription	Pancreas	Pancrea
11	chr12:117911000-117920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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