Variant report

Variant	rs10711696
Chromosome Location	chr2:54022171-54022172
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54013384..54018041-chr2:54019563..54022732,5	K562	blood:
2	chr2:54019493..54021003-chr2:54021744..54023776,2	K562	blood:
3	chr2:54019955..54022961-chr2:54036087..54038626,3	MCF-7	breast:
4	chr2:54014625..54016800-chr2:54021508..54023990,3	K562	blood:
5	chr2:54018818..54021003-chr2:54021378..54023244,2	K562	blood:

Variant related genes	Relation type
ENSG00000115239	Chromatin interaction
ENSG00000068912	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003263	chr2:53863287-54055359	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv535720	chr2:53863287-54055359	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv834058	chr2:53900674-54072011	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1009829	chr2:53980562-54051927	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv963914	chr2:54021710-54028552	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2502325	chr2:54022171-54022171	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv202319	chr2:54022171-54022171	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1964465	chr2:54022171-54022172	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54015200-54024000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:54015200-54025400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:54015200-54029800	Weak transcription	Esophagus	oesophagus
4	chr2:54015200-54038200	Weak transcription	Small Intestine	intestine
5	chr2:54015200-54046200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:54015200-54046200	Weak transcription	Aorta	Aorta
7	chr2:54015200-54051600	Weak transcription	Stomach Mucosa	stomach
8	chr2:54015200-54053800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:54015600-54022200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:54015600-54022200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:54015600-54022200	Weak transcription	Brain Germinal Matrix	brain
12	chr2:54015600-54022200	Weak transcription	Fetal Kidney	kidney
13	chr2:54015600-54022800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:54015600-54029600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:54015600-54035600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:54015600-54035800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:54015600-54054600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:54015800-54022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:54015800-54022200	Weak transcription	Primary T cells from cord blood	blood
20	chr2:54015800-54022200	Weak transcription	Fetal Intestine Large	intestine
21	chr2:54015800-54022200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:54015800-54022200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:54015800-54022200	Weak transcription	Thymus	Thymus
24	chr2:54015800-54022200	Weak transcription	K562	blood
25	chr2:54015800-54022200	Weak transcription	NHEK	skin
26	chr2:54015800-54022400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:54015800-54022400	Weak transcription	Primary B cells from cord blood	blood
28	chr2:54015800-54022600	Weak transcription	Brain Anterior Caudate	brain
29	chr2:54015800-54022800	Weak transcription	Fetal Brain Female	brain
30	chr2:54015800-54023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:54015800-54023600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:54015800-54023600	Weak transcription	HSMMtube	muscle
33	chr2:54015800-54024400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:54015800-54024800	Weak transcription	HUVEC	blood vessel
35	chr2:54015800-54025000	Weak transcription	Right Ventricle	heart
36	chr2:54015800-54025200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:54015800-54026000	Weak transcription	Fetal Brain Male	brain
38	chr2:54015800-54028600	Weak transcription	HMEC	breast
39	chr2:54015800-54029400	Weak transcription	Brain Substantia Nigra	brain
40	chr2:54015800-54029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:54015800-54029800	Weak transcription	Psoas Muscle	Psoas
42	chr2:54015800-54029800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:54015800-54038400	Weak transcription	Fetal Heart	heart
44	chr2:54015800-54054000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:54016000-54022200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr2:54016000-54022200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:54016000-54022200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:54016000-54022400	Weak transcription	A549	lung
49	chr2:54016000-54031600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr2:54016200-54022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links