Variant report

Variant	rs10732775
Chromosome Location	chr10:95528271-95528272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95527947..95530027-chr10:95533971..95535775,2	MCF-7	breast:
2	chr10:95520555..95522650-chr10:95526839..95529354,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10736079	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748614	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882331	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187596	1.00[CHB][hapmap]
rs1998840	1.00[CHB][hapmap]
rs9420630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520600-95529400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:95523200-95529800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:95523400-95529400	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:95524000-95529600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:95526000-95528400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95526000-95530400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:95526600-95533000	Enhancers	Liver	Liver
11	chr10:95527200-95529000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95527400-95529800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:95527400-95530000	Enhancers	Brain Anterior Caudate	brain
14	chr10:95527600-95529400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:95527600-95530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:95527800-95528600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:95527800-95529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:95528000-95529400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:95528000-95529600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:95528000-95529600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:95528000-95529800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:95528000-95530400	Weak transcription	A549	lung
23	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links