Variant report

Variant	rs10735563
Chromosome Location	chr9:72367499-72367500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:72363859..72367648-chr9:72373327..72375290,5	MCF-7	breast:
2	chr9:72360858..72363722-chr9:72367124..72369107,2	K562	blood:
3	chr9:72366292..72369666-chr9:72369993..72373484,7	K562	blood:
4	chr9:72313523..72315444-chr9:72367244..72369414,2	K562	blood:
5	chr9:72351018..72353363-chr9:72366792..72368654,2	K562	blood:
6	chr9:72366998..72368657-chr9:72373564..72375559,2	K562	blood:
7	chr9:72360152..72362800-chr9:72364655..72369107,4	K562	blood:
8	chr9:72364587..72367878-chr9:72369030..72373518,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188647	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10511968	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10780613	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10867932	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139904	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11139928	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11139962	0.96[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139992	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11140074	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12685725	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1330241	0.94[EUR][1000 genomes]
rs1854684	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1854685	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2274744	0.81[AMR][1000 genomes]
rs2309518	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7862630	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72333400-72374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:72347200-72371400	Weak transcription	Small Intestine	intestine
3	chr9:72347200-72373400	Weak transcription	Esophagus	oesophagus
4	chr9:72347200-72373400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:72347200-72374200	Weak transcription	Spleen	Spleen
6	chr9:72347400-72374000	Weak transcription	Gastric	stomach
7	chr9:72347600-72368400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:72348800-72368600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:72348800-72373000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:72348800-72373000	Weak transcription	NHEK	skin
11	chr9:72348800-72373200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:72356800-72370000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:72359800-72373400	Weak transcription	Placenta	Placenta
14	chr9:72360000-72371400	Weak transcription	Pancreas	Pancrea
15	chr9:72360200-72372200	Weak transcription	HMEC	breast
16	chr9:72361400-72371600	Weak transcription	K562	blood
17	chr9:72362400-72371400	Weak transcription	Right Atrium	heart
18	chr9:72362400-72373000	Weak transcription	Adipose Nuclei	Adipose
19	chr9:72362400-72373400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:72362600-72373200	Weak transcription	Fetal Stomach	stomach
21	chr9:72362800-72368800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:72362800-72373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:72362800-72373400	Weak transcription	Aorta	Aorta
24	chr9:72363000-72368200	Weak transcription	HUVEC	blood vessel
25	chr9:72363000-72369400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr9:72363000-72373400	Weak transcription	Ovary	ovary
27	chr9:72363200-72368600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr9:72363200-72373200	Weak transcription	Right Ventricle	heart
29	chr9:72363200-72374000	Weak transcription	Lung	lung
30	chr9:72363600-72371200	Weak transcription	Fetal Heart	heart
31	chr9:72363800-72370400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:72364000-72373000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:72364200-72369400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
34	chr9:72364200-72372200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:72364200-72372400	Weak transcription	NH-A	brain
36	chr9:72364200-72373200	Weak transcription	HSMMtube	muscle
37	chr9:72364200-72373400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:72364400-72372200	Weak transcription	Osteobl	bone
39	chr9:72364400-72373000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:72364600-72372400	Weak transcription	A549	lung
41	chr9:72364800-72370000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:72365000-72368000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:72365000-72368800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:72365000-72371600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr9:72365000-72372400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr9:72365000-72372600	Weak transcription	Hela-S3	cervix
47	chr9:72365200-72367600	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr9:72365200-72370000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:72365200-72372000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:72365200-72372400	Weak transcription	NHDF-Ad	bronchial

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