Variant report

Variant	rs10736003
Chromosome Location	chr12:42998139-42998140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42982107..42983667-chr12:42998138..43000205,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139174	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10785356	0.91[EUR][1000 genomes]
rs10785358	0.94[EUR][1000 genomes]
rs10880331	1.00[CEU][hapmap]
rs12423156	0.93[AMR][1000 genomes]
rs12423337	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423346	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423349	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423470	0.93[AMR][1000 genomes]
rs12423824	0.93[AMR][1000 genomes]
rs12424138	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12424455	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12424504	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12424511	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12424763	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12424886	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12425177	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12425193	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12425470	1.00[CEU][hapmap]
rs12425775	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12426290	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12426303	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12426718	0.93[AMR][1000 genomes]
rs12426988	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12827135	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17091490	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17091505	1.00[CEU][hapmap]
rs1922756	0.81[EUR][1000 genomes]
rs2178751	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2406858	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2406861	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2406862	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2897539	0.81[EUR][1000 genomes]
rs4238085	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4321015	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4590936	0.81[EUR][1000 genomes]
rs4768425	0.91[EUR][1000 genomes]
rs57263961	0.93[AMR][1000 genomes]
rs57908879	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60211398	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60670517	0.86[AMR][1000 genomes]
rs60776045	0.93[AMR][1000 genomes]
rs7131974	1.00[CEU][hapmap]
rs7133039	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7133172	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7133774	0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7295407	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7301558	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7304849	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7306683	1.00[CEU][hapmap]
rs7307159	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7314565	0.81[EUR][1000 genomes]
rs7952819	0.94[EUR][1000 genomes]
rs7959843	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7964774	0.94[EUR][1000 genomes]
rs7976696	0.81[EUR][1000 genomes]
rs9988993	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832388	chr12:42878328-43087069	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42991000-43001600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:42996600-42998200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:42997600-43001400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:42997800-42999400	Weak transcription	Fetal Heart	heart
5	chr12:42998000-42998200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr12:42998000-43000200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:42998000-43002200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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