Variant report
Variant | rs1073623 |
---|---|
Chromosome Location | chr5:15153811-15153812 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10059252 | 0.81[EUR][1000 genomes] |
rs10059362 | 0.81[EUR][1000 genomes] |
rs10059428 | 0.81[EUR][1000 genomes] |
rs10061831 | 0.80[EUR][1000 genomes] |
rs10070527 | 0.81[EUR][1000 genomes] |
rs10078235 | 0.81[EUR][1000 genomes] |
rs1027577 | 0.81[EUR][1000 genomes] |
rs10475039 | 0.80[EUR][1000 genomes] |
rs10475040 | 0.81[EUR][1000 genomes] |
rs11133805 | 0.81[EUR][1000 genomes] |
rs1122149 | 0.81[EUR][1000 genomes] |
rs1122150 | 0.81[EUR][1000 genomes] |
rs1160025 | 0.82[EUR][1000 genomes] |
rs12716107 | 0.81[EUR][1000 genomes] |
rs1457161 | 0.82[EUR][1000 genomes] |
rs1466014 | 0.81[EUR][1000 genomes] |
rs1500229 | 0.81[EUR][1000 genomes] |
rs1500230 | 0.81[EUR][1000 genomes] |
rs1500231 | 0.81[EUR][1000 genomes] |
rs1598741 | 0.82[EUR][1000 genomes] |
rs166029 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs181796 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1840874 | 0.82[EUR][1000 genomes] |
rs2002783 | 0.82[EUR][1000 genomes] |
rs2100613 | 0.82[EUR][1000 genomes] |
rs2121181 | 0.81[EUR][1000 genomes] |
rs2252465 | 0.82[EUR][1000 genomes] |
rs2252466 | 0.82[EUR][1000 genomes] |
rs2402051 | 0.81[EUR][1000 genomes] |
rs2402052 | 0.81[EUR][1000 genomes] |
rs2438385 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2454884 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2577986 | 0.82[EUR][1000 genomes] |
rs2577987 | 0.82[EUR][1000 genomes] |
rs2607529 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs301076 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35345872 | 0.92[ASN][1000 genomes] |
rs4554219 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs664016 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6872754 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs752386 | 0.82[EUR][1000 genomes] |
rs7713564 | 0.81[EUR][1000 genomes] |
rs7721868 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs897817 | 0.82[EUR][1000 genomes] |
rs897818 | 0.82[EUR][1000 genomes] |
rs897819 | 0.82[EUR][1000 genomes] |
rs897820 | 0.82[EUR][1000 genomes] |
rs897821 | 0.82[EUR][1000 genomes] |
rs9284959 | 0.81[EUR][1000 genomes] |
rs977760 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs977762 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs977763 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530221 | chr5:14859687-15364470 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1017579 | chr5:14888997-15194335 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
3 | nsv516929 | chr5:15087791-15870300 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv1023068 | chr5:15095221-15863583 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv869040 | chr5:15097602-15866117 | Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
6 | nsv881665 | chr5:15149009-15317509 | Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv530222 | chr5:15151662-15851485 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:15152600-15155200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |