Variant report

Variant	rs10736443
Chromosome Location	chr11:107941976-107941977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:107941847-107942047	MCF10A-Er-Src	breast:	n/a	chr11:107941986-107941995
2	FOS	chr11:107941792-107942110	MCF10A-Er-Src	breast:	n/a	chr11:107941987-107941996 chr11:107941987-107941994
3	FOS	chr11:107941865-107942141	MCF10A-Er-Src	breast:	n/a	chr11:107941987-107941996 chr11:107941987-107941994
4	JUND	chr11:107941867-107942067	HepG2	liver:	n/a	chr11:107941985-107941996 chr11:107941987-107941996 chr11:107941987-107941994
5	FOS	chr11:107941786-107942164	MCF10A-Er-Src	breast:	n/a	chr11:107941987-107941996 chr11:107941987-107941994
6	CEBPB	chr11:107941869-107942211	A549	lung:	n/a	chr11:107942022-107942033
7	FOS	chr11:107941837-107942139	MCF10A-Er-Src	breast:	n/a	chr11:107941987-107941996 chr11:107941987-107941994
8	CEBPB	chr11:107941872-107942173	IMR90	lung:	n/a	chr11:107942022-107942033
9	CEBPB	chr11:107941910-107942046	HepG2	liver:	n/a	chr11:107942022-107942033

Variant related genes	Relation type
CUL5	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10890799	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3858397	0.92[AFR][1000 genomes]
rs7109537	0.91[AFR][1000 genomes]
rs7934496	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
2	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
5	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
6	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:107906800-107942000	Weak transcription	Aorta	Aorta
9	chr11:107906800-107945600	Weak transcription	Spleen	Spleen
10	chr11:107906800-107947000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
12	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:107918200-107942000	Weak transcription	Gastric	stomach
15	chr11:107918200-107946200	Weak transcription	Pancreas	Pancrea
16	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:107926200-107950200	Weak transcription	HMEC	breast
18	chr11:107927000-107950400	Weak transcription	Colonic Mucosa	Colon
19	chr11:107928200-107953600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:107928200-107962000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
22	chr11:107928400-107946000	Weak transcription	HSMMtube	muscle
23	chr11:107928400-107950200	Weak transcription	Fetal Brain Male	brain
24	chr11:107928400-107950400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:107928600-107944400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:107928600-107944400	Weak transcription	HepG2	liver
27	chr11:107930400-107945600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:107931600-107942200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:107931800-107942000	Weak transcription	Left Ventricle	heart
30	chr11:107931800-107946200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:107933200-107950400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:107934200-107944400	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:107934200-107944400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:107934200-107944600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:107934200-107946000	Weak transcription	Brain Anterior Caudate	brain
36	chr11:107934800-107943000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:107934800-107943000	Weak transcription	NH-A	brain
38	chr11:107934800-107944600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:107935000-107942000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:107935000-107942000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:107935000-107942200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:107935200-107944400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:107935200-107946000	Weak transcription	Ovary	ovary
44	chr11:107935200-107957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:107935400-107942000	Weak transcription	Placenta	Placenta
46	chr11:107935400-107942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:107935400-107942600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:107935600-107954400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:107935800-107955800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:107936400-107942000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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