Variant report

Variant	rs1073646
Chromosome Location	chr10:6164310-6164311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6158099..6160276-chr10:6162186..6164567,3	K562	blood:
2	chr10:6133090..6135580-chr10:6163939..6166361,2	K562	blood:
3	chr10:6155964..6160199-chr10:6162933..6165493,4	K562	blood:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10905773	0.82[ASN][1000 genomes]
rs11256848	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11256860	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11256879	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12268391	0.82[EUR][1000 genomes]
rs12571090	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274358	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2274359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4747865	0.86[ASN][1000 genomes]
rs6602450	1.00[CEU][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes]
rs7894037	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7899110	0.81[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6154400-6166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:6157000-6166400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:6157000-6170800	Weak transcription	Gastric	stomach
4	chr10:6157600-6165400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:6157600-6165400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:6157600-6166200	Weak transcription	Brain Angular Gyrus	brain
7	chr10:6157600-6166200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:6157600-6166400	Weak transcription	Spleen	Spleen
9	chr10:6157600-6170400	Weak transcription	Lung	lung
10	chr10:6157600-6170400	Weak transcription	Thymus	Thymus
11	chr10:6157600-6171000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:6157600-6172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:6157800-6170800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:6158200-6166400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:6158200-6168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:6158400-6169400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:6158600-6166600	Weak transcription	HUVEC	blood vessel
18	chr10:6158600-6166600	Weak transcription	K562	blood
19	chr10:6158600-6168000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:6158600-6170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:6158600-6170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:6158800-6165400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:6159000-6170400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:6159000-6170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:6159200-6165200	Weak transcription	GM12878-XiMat	blood
26	chr10:6159200-6165400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:6159200-6165400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:6159200-6165400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:6159200-6165400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:6159200-6165800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:6159200-6166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:6159200-6166200	Weak transcription	Placenta	Placenta
33	chr10:6159200-6166400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:6159200-6166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:6159200-6166600	Weak transcription	A549	lung
36	chr10:6159200-6166600	Weak transcription	NHDF-Ad	bronchial
37	chr10:6159200-6166600	Weak transcription	Osteobl	bone
38	chr10:6159200-6167200	Weak transcription	Primary B cells from cord blood	blood
39	chr10:6159200-6170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:6159200-6170400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:6159200-6170400	Weak transcription	NH-A	brain
42	chr10:6159200-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:6159200-6170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:6159200-6170600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:6159400-6165800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:6159400-6166600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:6159400-6166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:6159400-6167000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:6159400-6170200	Weak transcription	Primary T cells from cord blood	blood
50	chr10:6159400-6172000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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