Variant report

Variant	rs10737018
Chromosome Location	chr10:5766337-5766338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5725933..5727611-chr10:5766306..5768774,2	MCF-7	breast:
2	chr10:5758553..5760843-chr10:5766010..5768055,2	MCF-7	breast:
3	chr10:5766311..5769267-chr10:5770852..5774721,4	K562	blood:
4	chr10:5733545..5736331-chr10:5766284..5768389,2	K562	blood:

Variant related genes	Relation type
ENSG00000108021	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10905029	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10905066	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11596702	0.81[MEX][hapmap]
rs1418739	0.87[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs2254067	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2380209	0.81[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2386620	0.81[MEX][hapmap];0.92[MKK][hapmap]
rs2669135	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2669137	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2669142	0.81[MKK][hapmap]
rs2797484	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2797486	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2797487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2797491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2797493	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797494	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2797501	0.87[ASW][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.88[ASN][1000 genomes]
rs4423100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56352451	0.88[ASN][1000 genomes]
rs61016063	0.94[EUR][1000 genomes]
rs7073359	0.84[MKK][hapmap]
rs7082754	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7900361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs7907687	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9423934	0.87[ASW][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv519891	chr10:5753737-5768493	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv525080	chr10:5754611-5766337	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10737018	CALML5	cis	parietal	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5735200-5767000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:5738600-5769000	Weak transcription	Left Ventricle	heart
3	chr10:5740400-5768600	Weak transcription	Psoas Muscle	Psoas
4	chr10:5752600-5767000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:5753800-5768600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:5753800-5769000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:5753800-5769000	Weak transcription	Thymus	Thymus
8	chr10:5753800-5772200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:5753800-5772400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:5753800-5772600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:5753800-5772800	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:5753800-5773200	Weak transcription	NHLF	lung
13	chr10:5753800-5783400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:5753800-5787000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:5754000-5768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:5754000-5772800	Weak transcription	Ovary	ovary
17	chr10:5754000-5773200	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:5754200-5773000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:5754400-5781600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:5754600-5767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:5755400-5772600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:5757000-5772800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:5757800-5772600	Weak transcription	Right Ventricle	heart
24	chr10:5758000-5767000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:5758600-5772600	Weak transcription	Esophagus	oesophagus
26	chr10:5759600-5772800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:5761000-5768200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:5761000-5768400	Weak transcription	Fetal Lung	lung
29	chr10:5761000-5768800	Weak transcription	NHDF-Ad	bronchial
30	chr10:5761000-5772800	Weak transcription	Small Intestine	intestine
31	chr10:5761000-5773200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:5761400-5772600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:5762000-5769000	Weak transcription	Hela-S3	cervix
34	chr10:5762200-5766800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:5762200-5766800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr10:5762200-5783000	Weak transcription	Stomach Mucosa	stomach
37	chr10:5762200-5795400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:5762400-5767000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:5762400-5767200	Weak transcription	Pancreas	Pancrea
40	chr10:5762400-5768400	Weak transcription	Colonic Mucosa	Colon
41	chr10:5762400-5768800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:5762400-5772400	Weak transcription	HSMMtube	muscle
43	chr10:5762400-5772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:5762400-5772600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:5762400-5775000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:5762400-5794600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:5762600-5766600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:5762600-5843400	Strong transcription	Dnd41	blood
49	chr10:5762800-5767000	Weak transcription	NHEK	skin
50	chr10:5762800-5768800	Weak transcription	HUVEC	blood vessel

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