Variant report

Variant	rs10738359
Chromosome Location	chr9:14340913-14340914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1998440	0.94[ASN][1000 genomes]
rs1998441	0.88[ASN][1000 genomes]
rs4740568	0.94[ASN][1000 genomes]
rs4741363	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7036373	0.94[ASN][1000 genomes]
rs7036460	0.94[ASN][1000 genomes]
rs932689	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892599	chr9:14310504-14350469	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14331200-14341000	Weak transcription	Psoas Muscle	Psoas
2	chr9:14336800-14341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:14338600-14343000	Enhancers	Fetal Brain Female	brain
4	chr9:14338800-14343600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:14339000-14341000	Weak transcription	Fetal Brain Male	brain
6	chr9:14339600-14343200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:14339600-14343400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:14339600-14344000	Enhancers	Adipose Nuclei	Adipose
9	chr9:14340000-14341000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr9:14340000-14341200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr9:14340000-14341800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr9:14340000-14344000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:14340200-14341200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr9:14340200-14344000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:14340400-14341400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr9:14340400-14341800	Enhancers	Brain Germinal Matrix	brain
17	chr9:14340400-14343400	Weak transcription	Aorta	Aorta
18	chr9:14340400-14343600	Enhancers	Brain Cingulate Gyrus	brain
19	chr9:14340600-14341000	Enhancers	Right Ventricle	heart
20	chr9:14340600-14341400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
21	chr9:14340600-14343200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr9:14340600-14344000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:14340800-14341200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr9:14340800-14341600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:14340800-14341600	Enhancers	Fetal Lung	lung
26	chr9:14340800-14341800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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