Variant report

Variant	rs10738510
Chromosome Location	chr9:18459597-18459598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10217753	0.81[CEU][hapmap]
rs10810970	0.85[ASN][1000 genomes]
rs10810971	0.90[AFR][1000 genomes]
rs10810973	0.81[ASN][1000 genomes]
rs11793923	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1281350	0.85[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs1281352	0.80[ASN][1000 genomes]
rs1832747	0.84[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2153415	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2153416	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs4961650	0.80[ASN][1000 genomes]
rs4961652	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4961653	0.81[CEU][hapmap]
rs6475218	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6475219	0.96[ASN][1000 genomes]
rs6475221	0.80[ASN][1000 genomes]
rs7019399	0.96[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7856703	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7864856	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18456800-18459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18456800-18459800	Enhancers	HUVEC	blood vessel
3	chr9:18457000-18459800	Enhancers	NHEK	skin
4	chr9:18457200-18461600	Enhancers	HMEC	breast
5	chr9:18457600-18460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:18457800-18463800	Weak transcription	NHLF	lung
7	chr9:18458000-18459600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:18458000-18463800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:18458200-18460200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:18458600-18459800	Enhancers	HSMMtube	muscle
11	chr9:18458800-18459600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:18459200-18459600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:18459200-18460200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:18459200-18460200	Enhancers	Hela-S3	cervix
15	chr9:18459200-18460200	Enhancers	NHDF-Ad	bronchial
16	chr9:18459200-18460800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:18459200-18460800	Enhancers	Osteobl	bone
18	chr9:18459400-18459600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:18459400-18459800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:18459400-18459800	Enhancers	NH-A	brain
21	chr9:18459400-18460200	Enhancers	HSMM	muscle

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