Variant report

Variant	rs10739169
Chromosome Location	chr9:8784446-8784447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10115018	0.86[CEU][hapmap];0.87[JPT][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10119916	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10120008	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10815951	0.89[EUR][1000 genomes]
rs12376837	0.88[CEU][hapmap];0.82[GIH][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs1434269	0.89[EUR][1000 genomes]
rs1550004	0.83[LWK][hapmap]
rs7032107	0.88[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs765802	0.86[EUR][1000 genomes]
rs7867313	0.88[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv892239	chr9:8773599-8805462	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv2761247	chr9:8775019-8786718	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8778600-8785600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:8778800-8798600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:8779800-8784600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:8781200-8784800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:8781600-8784800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:8781800-8784600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:8781800-8784800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:8781800-8785000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:8781800-8785000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:8781800-8785800	Weak transcription	Fetal Brain Male	brain
11	chr9:8783400-8784800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:8783400-8785600	Enhancers	Fetal Kidney	kidney
13	chr9:8783600-8785000	Enhancers	Brain Substantia Nigra	brain
14	chr9:8783600-8785600	Enhancers	Brain Anterior Caudate	brain
15	chr9:8783600-8785600	Enhancers	Brain Hippocampus Middle	brain
16	chr9:8783600-8785600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr9:8783600-8785800	Enhancers	Fetal Stomach	stomach
18	chr9:8783600-8786200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:8783600-8786200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:8783800-8784600	Flanking Active TSS	Fetal Lung	lung
21	chr9:8783800-8784800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:8783800-8785400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:8783800-8786200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:8784000-8785000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr9:8784000-8785000	Weak transcription	Fetal Muscle Leg	muscle
26	chr9:8784000-8785200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:8784000-8785200	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:8784000-8785800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:8784000-8786200	Enhancers	Brain Angular Gyrus	brain
30	chr9:8784000-8786400	Active TSS	Aorta	Aorta
31	chr9:8784200-8784800	Enhancers	Fetal Heart	heart
32	chr9:8784200-8785800	Active TSS	Ovary	ovary
33	chr9:8784200-8786000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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