Variant report

Variant	rs10739208
Chromosome Location	chr9:9985322-9985323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10217369	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10217554	0.83[AFR][1000 genomes]
rs10511529	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10755999	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs10759118	0.85[CHB][hapmap]
rs10759124	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs10809002	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs10809003	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10809004	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10809018	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs10809019	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs10816271	0.83[AFR][1000 genomes]
rs10816274	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10816275	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs10816276	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10816277	0.81[ASN][1000 genomes]
rs10978157	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1217003	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1217004	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1238877	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1343534	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1343535	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs16930828	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1891917	0.83[AFR][1000 genomes]
rs1936366	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs2000298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2096316	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2211514	0.80[ASN][1000 genomes]
rs2382090	0.81[CHB][hapmap]
rs2382092	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2382101	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2890899	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs291277	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4305952	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4333668	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4425814	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4497018	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4560848	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4741003	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4742646	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs6477434	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs6477435	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7022969	0.90[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs7027578	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7028276	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031512	0.87[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap]
rs7040189	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs727756	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7858099	0.81[CHB][hapmap]
rs7874659	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7874951	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs9299106	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022613	chr9:9857456-9985419	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv539986	chr9:9857456-9985419	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv613359	chr9:9904481-10008130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1031978	chr9:9905053-10006290	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv539987	chr9:9905053-10006290	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1025234	chr9:9905178-10011184	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1026679	chr9:9919783-10069385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1032019	chr9:9919783-10070211	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1016880	chr9:9941673-9996437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1023110	chr9:9941673-9997877	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv1017809	chr9:9943339-9994698	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv539988	chr9:9943339-9994698	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1017182	chr9:9945265-10011933	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	nsv1018157	chr9:9945648-10014310	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
19	nsv1017405	chr9:9950856-10006290	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv539990	chr9:9950856-10006290	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
21	nsv525613	chr9:9957866-10011571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv526124	chr9:9957866-10011571	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
23	nsv613366	chr9:9957866-10011571	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
24	nsv613367	chr9:9957866-10025975	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
25	nsv1029813	chr9:9960375-9997877	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	nsv466154	chr9:9962204-9993029	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv613369	chr9:9962204-9993029	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv1031879	chr9:9963095-9994837	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv539991	chr9:9963095-9994837	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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