Variant report

Variant	rs10739217
Chromosome Location	chr9:108735393-108735394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108733704..108736486-chr9:108737620..108740615,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2417661	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108726800-108736800	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:108729000-108736800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:108732200-108741000	Weak transcription	Brain Germinal Matrix	brain
4	chr9:108732400-108738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:108732600-108735600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:108732600-108736200	Weak transcription	Fetal Brain Male	brain
7	chr9:108732600-108738000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:108732600-108738400	Weak transcription	Fetal Brain Female	brain
9	chr9:108733400-108737000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:108733600-108743000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:108734000-108735400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:108734200-108738400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:108734200-108738400	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:108734400-108736200	Weak transcription	Fetal Kidney	kidney
15	chr9:108734400-108736800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:108734400-108738400	Enhancers	Brain Hippocampus Middle	brain
17	chr9:108734400-108740600	Enhancers	Brain Substantia Nigra	brain
18	chr9:108734600-108735400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:108734600-108736000	Enhancers	Brain Anterior Caudate	brain
20	chr9:108734600-108736400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr9:108734600-108736600	Enhancers	Fetal Heart	heart
22	chr9:108734600-108738200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:108734800-108736600	Enhancers	Brain Angular Gyrus	brain
24	chr9:108734800-108737800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:108734800-108738200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:108734800-108738400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:108735000-108742000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:108735200-108735600	Enhancers	Adipose Nuclei	Adipose
29	chr9:108735200-108736200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:108735200-108736200	Weak transcription	Fetal Lung	lung
31	chr9:108735200-108736400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:108735200-108737000	Weak transcription	Ovary	ovary
33	chr9:108735200-108738600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:108735200-108739800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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