Variant report

Variant	rs10739924
Chromosome Location	chr9:94835241-94835242
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94829684..94833398-chr9:94833829..94839474,7	MCF-7	breast:
2	chr9:94833215..94835590-chr9:94874330..94876455,2	K562	blood:
3	chr9:94828730..94831547-chr9:94834645..94837626,3	MCF-7	breast:
4	chr9:94774907..94777805-chr9:94835179..94836803,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10118072	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10512220	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10733743	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10739925	0.92[ASN][1000 genomes]
rs10820931	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12340044	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1892268	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297568	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2895201	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847308	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479400	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479402	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7020136	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7037848	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7041193	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042102	0.84[ASN][1000 genomes]
rs7046430	0.88[ASN][1000 genomes]
rs7848874	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7848987	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7859570	0.82[ASN][1000 genomes]
rs7859689	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7869504	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7871444	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94810800-94860200	Weak transcription	Right Ventricle	heart
2	chr9:94817800-94877000	Weak transcription	Fetal Heart	heart
3	chr9:94820600-94844400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:94822400-94860200	Weak transcription	Stomach Mucosa	stomach
5	chr9:94823200-94842800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:94823200-94844400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:94824000-94843600	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr9:94824000-94844000	Strong transcription	Primary B cells from cord blood	blood
9	chr9:94824000-94860400	Weak transcription	Psoas Muscle	Psoas
10	chr9:94824800-94844200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:94825400-94844200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:94825600-94844200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr9:94825600-94844400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:94826400-94835600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:94826400-94843000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:94826600-94843800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr9:94826800-94844400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:94826800-94844400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr9:94826800-94844400	Strong transcription	Primary T cells from cord blood	blood
20	chr9:94827000-94843400	Strong transcription	Thymus	Thymus
21	chr9:94827000-94844000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:94827200-94837400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:94827200-94838400	Strong transcription	GM12878-XiMat	blood
24	chr9:94827200-94856800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:94827400-94836800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:94827400-94844000	Strong transcription	Liver	Liver
27	chr9:94827800-94843200	Strong transcription	Fetal Stomach	stomach
28	chr9:94827800-94843800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:94828400-94842600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:94828400-94842800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:94828600-94844000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:94828800-94836200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:94828800-94837200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:94828800-94839000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:94828800-94850600	Weak transcription	Fetal Brain Male	brain
36	chr9:94828800-94850600	Weak transcription	Fetal Kidney	kidney
37	chr9:94829000-94841800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:94829000-94862600	Weak transcription	Hela-S3	cervix
39	chr9:94830000-94836400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:94830000-94837400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr9:94830000-94838400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:94830000-94840400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr9:94830000-94845200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:94830000-94850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:94830000-94856800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:94830200-94839000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr9:94830200-94839000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:94830200-94839600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr9:94830200-94856200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:94830200-94857000	Weak transcription	HUVEC	blood vessel

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