Variant report

Variant	rs10739995
Chromosome Location	chr9:136741349-136741350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136644385..136647944-chr9:136738272..136741517,4	MCF-7	breast:
2	chr9:136733619..136743972-chr9:136852076..136861381,50	MCF-7	breast:
3	chr9:136741297..136743504-chr9:136863564..136865596,2	MCF-7	breast:
4	chr9:136737400..136743457-chr9:136819359..136829756,12	MCF-7	breast:
5	chr9:136736139..136748779-chr9:136853521..136861128,82	MCF-7	breast:
6	chr9:136701985..136719064-chr9:136732605..136742545,35	MCF-7	breast:
7	chr9:136723768..136727391-chr9:136738428..136742111,4	MCF-7	breast:
8	chr9:136707781..136709506-chr9:136739982..136742386,2	MCF-7	breast:
9	chr9:136685827..136689292-chr9:136739053..136741402,3	MCF-7	breast:
10	chr9:136734507..136736594-chr9:136741200..136744507,3	K562	blood:
11	chr9:136739328..136742123-chr9:136841796..136845434,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SARDH-3	chr9:136741069-136741500	NONHSAT135345

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10821527	0.89[EUR][1000 genomes]
rs10821528	0.86[EUR][1000 genomes]
rs10993837	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12001180	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12001216	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2073830	0.86[EUR][1000 genomes]
rs3780737	0.85[EUR][1000 genomes]
rs57520738	0.89[EUR][1000 genomes]
rs61034217	0.86[EUR][1000 genomes]
rs7021948	0.83[EUR][1000 genomes]
rs7044185	0.88[EUR][1000 genomes]
rs7852459	0.86[EUR][1000 genomes]
rs7859624	0.89[EUR][1000 genomes]
rs7869522	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9657700	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
3	chr9:136735600-136744200	Weak transcription	Fetal Brain Male	brain
4	chr9:136735600-136747400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:136735800-136741400	Weak transcription	Gastric	stomach
6	chr9:136735800-136742400	Weak transcription	GM12878-XiMat	blood
7	chr9:136736000-136760000	Weak transcription	Primary B cells from cord blood	blood
8	chr9:136736400-136745200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:136736800-136756200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:136737000-136743000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:136737200-136742800	Enhancers	Fetal Muscle Leg	muscle
12	chr9:136737200-136749000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr9:136738200-136743000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:136738400-136741400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:136738400-136741400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:136738400-136741800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:136738400-136742000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:136738400-136742400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:136738400-136742600	Enhancers	Esophagus	oesophagus
20	chr9:136738400-136743800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:136738400-136744800	Genic enhancers	Fetal Intestine Small	intestine
22	chr9:136738800-136742000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:136738800-136744400	Weak transcription	Fetal Brain Female	brain
24	chr9:136738800-136746000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:136738800-136746400	Weak transcription	Right Atrium	heart
26	chr9:136739000-136741400	Enhancers	HSMMtube	muscle
27	chr9:136739200-136741800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr9:136739200-136742400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:136739400-136741800	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:136739400-136744400	Enhancers	Pancreas	Pancrea
31	chr9:136739400-136746400	Weak transcription	Fetal Lung	lung
32	chr9:136739600-136742000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:136739800-136741800	Enhancers	HepG2	liver
34	chr9:136739800-136742600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:136739800-136747600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:136739800-136748000	Enhancers	Liver	Liver
37	chr9:136739800-136748200	Weak transcription	Fetal Thymus	thymus
38	chr9:136740000-136741400	Enhancers	HSMM	muscle
39	chr9:136740000-136741800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:136740000-136741800	Enhancers	A549	lung
41	chr9:136740000-136743200	Enhancers	HMEC	breast
42	chr9:136740000-136747200	Weak transcription	NHLF	lung
43	chr9:136740000-136754800	Weak transcription	Osteobl	bone
44	chr9:136740200-136747000	Weak transcription	Lung	lung
45	chr9:136740200-136757400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr9:136740400-136741600	Enhancers	NHEK	skin
47	chr9:136740400-136746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr9:136740400-136746400	Weak transcription	Spleen	Spleen
49	chr9:136740600-136741400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:136740600-136741400	Weak transcription	Fetal Intestine Large	intestine

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