Variant report

Variant	rs10743116
Chromosome Location	chr11:9694617-9694618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9694330..9696170-chr11:9697340..9699086,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10840285	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223505	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435463	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61878086	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7483256	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3425952	chr11:9691601-9694749	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3380506	chr11:9692151-9694674	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9696000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:9686600-9702000	Weak transcription	Left Ventricle	heart
3	chr11:9686600-9702600	Weak transcription	Gastric	stomach
4	chr11:9686600-9704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
7	chr11:9686800-9696600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:9686800-9696800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
10	chr11:9686800-9716400	Weak transcription	Ovary	ovary
11	chr11:9687000-9697200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:9687200-9696600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:9687200-9696600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:9687200-9697200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:9687200-9702600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:9687200-9705000	Weak transcription	HSMM	muscle
17	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
18	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
19	chr11:9687400-9695800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:9687400-9696000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:9687400-9696000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:9687400-9697200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:9687400-9699000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:9687400-9699000	Weak transcription	NHEK	skin
25	chr11:9687400-9702600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:9687400-9709200	Weak transcription	HMEC	breast
27	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:9687600-9699000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:9687600-9700200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:9687800-9695800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:9687800-9703200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:9687800-9708000	Weak transcription	Pancreas	Pancrea
33	chr11:9687800-9709000	Weak transcription	Adipose Nuclei	Adipose
34	chr11:9688000-9695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:9688000-9696600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:9688000-9697200	Weak transcription	Brain Anterior Caudate	brain
37	chr11:9688000-9702400	Weak transcription	Fetal Stomach	stomach
38	chr11:9688200-9710000	Weak transcription	A549	lung
39	chr11:9689000-9703000	Weak transcription	Fetal Intestine Large	intestine
40	chr11:9689200-9696600	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:9689400-9696200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:9689400-9697200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:9689400-9697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:9689400-9706800	Weak transcription	Placenta	Placenta
45	chr11:9692200-9696600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
47	chr11:9693800-9696000	Genic enhancers	Primary B cells from peripheral blood	blood
48	chr11:9693800-9702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:9694000-9694800	Genic enhancers	NHDF-Ad	bronchial
50	chr11:9694000-9695000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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