Variant report

Variant	rs10744898
Chromosome Location	chr12:118044767-118044768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10444488	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1400591	0.89[EUR][1000 genomes]
rs1400592	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1517199	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1517200	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878418	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4767588	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58003813	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118038400-118045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:118042000-118044800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:118042200-118045000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:118042400-118045000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:118044600-118046000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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