Variant report

Variant	rs10745984
Chromosome Location	chr12:104265128-104265129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104263974..104266600-chr12:104512244..104514894,2	MCF-7	breast:
2	chr12:104164872..104166111-chr12:104264007..104265181,16	MCF-7	breast:
3	chr12:104152829..104155541-chr12:104264505..104266459,2	MCF-7	breast:
4	chr12:104256917..104259122-chr12:104264989..104267074,2	MCF-7	breast:
5	chr12:104262529..104265193-chr12:104278298..104280290,2	K562	blood:
6	chr12:104233636..104236103-chr12:104265046..104266861,2	K562	blood:

Variant related genes	Relation type
ENSG00000111696	Chromatin interaction
ENSG00000257327	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10778292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861130	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861146	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11111815	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111821	0.86[EUR][1000 genomes]
rs11111831	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12302488	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369947	0.92[CEU][hapmap]
rs12371102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034938	0.91[CEU][hapmap]
rs2576969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3812801	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4135138	1.00[JPT][hapmap]
rs6539103	0.95[ASN][1000 genomes]
rs7302036	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7968124	0.95[ASN][1000 genomes]
rs7971317	0.95[ASN][1000 genomes]
rs7971563	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9989004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34031	chr12:104114277-104298546	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104254800-104278200	Weak transcription	Aorta	Aorta
2	chr12:104263800-104265200	Enhancers	Colon Smooth Muscle	Colon
3	chr12:104263800-104265400	Enhancers	HepG2	liver
4	chr12:104264600-104265200	Weak transcription	Liver	Liver
5	chr12:104264800-104265200	Enhancers	Pancreas	Pancrea
6	chr12:104264800-104265200	Enhancers	Stomach Smooth Muscle	stomach
7	chr12:104265000-104265400	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links