Variant report

Variant	rs10746036
Chromosome Location	chr12:106064506-106064507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10507195	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv899503	chr12:106021477-106175903	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv560054	chr12:106048142-106083042	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3347157	chr12:106064314-106064801	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10746036	GAS2L3	cis	cerebellum	SCAN
rs10746036	MYBPC1	cis	cerebellum	SCAN
rs10746036	SGK196	trans	cerebellum	SCAN
rs10746036	SCYL2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106052400-106066400	Weak transcription	Aorta	Aorta
2	chr12:106061400-106066200	Weak transcription	Gastric	stomach
3	chr12:106062000-106065000	Weak transcription	Fetal Lung	lung
4	chr12:106063200-106066000	Weak transcription	Lung	lung
5	chr12:106064200-106064600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:106064200-106066600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:106064200-106067400	Enhancers	Fetal Muscle Leg	muscle
8	chr12:106064400-106064600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:106064400-106064600	Enhancers	Psoas Muscle	Psoas
10	chr12:106064400-106064600	Enhancers	Right Atrium	heart
11	chr12:106064400-106064800	Enhancers	NH-A	brain
12	chr12:106064400-106066600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:106064400-106066600	Enhancers	HSMMtube	muscle
14	chr12:106064400-106066800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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