Variant report

Variant	rs10747596
Chromosome Location	chr12:51230026-51230027
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51229364..51231906-chr12:51476163..51477901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110925	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10160844	0.82[ASN][1000 genomes]
rs10459237	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10459238	0.81[ASN][1000 genomes]
rs10459239	0.82[ASN][1000 genomes]
rs10747595	0.89[ASN][1000 genomes]
rs10747597	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10747599	0.80[ASN][1000 genomes]
rs10783393	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783394	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783395	0.82[ASN][1000 genomes]
rs10783404	0.84[ASN][1000 genomes]
rs10876099	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10876100	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10876105	0.83[ASN][1000 genomes]
rs10876115	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876119	0.83[ASN][1000 genomes]
rs1096030	0.85[ASN][1000 genomes]
rs1096031	0.84[ASN][1000 genomes]
rs1103441	0.85[ASN][1000 genomes]
rs11169587	0.82[ASN][1000 genomes]
rs11169588	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11169589	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11169592	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11169602	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11169603	0.81[ASN][1000 genomes]
rs11169608	0.86[ASN][1000 genomes]
rs11169609	0.86[ASN][1000 genomes]
rs11169610	0.85[ASN][1000 genomes]
rs11169612	0.85[ASN][1000 genomes]
rs11495280	0.83[ASN][1000 genomes]
rs11533636	0.84[ASN][1000 genomes]
rs12578465	0.84[ASN][1000 genomes]
rs12578466	0.84[ASN][1000 genomes]
rs12581103	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1362964	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1583697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1631348	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1642997	0.82[ASN][1000 genomes]
rs1643004	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1659375	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554852	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554854	0.85[ASN][1000 genomes]
rs3752667	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4483656	0.85[ASN][1000 genomes]
rs4768926	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4768937	0.82[ASN][1000 genomes]
rs4768938	0.82[ASN][1000 genomes]
rs4768939	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73100855	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7979616	0.86[ASN][1000 genomes]
rs829120	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs829122	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829126	0.80[ASN][1000 genomes]
rs829128	0.83[ASN][1000 genomes]
rs829129	0.83[ASN][1000 genomes]
rs829139	0.83[ASN][1000 genomes]
rs829141	0.83[ASN][1000 genomes]
rs829142	0.83[ASN][1000 genomes]
rs829143	0.87[ASN][1000 genomes]
rs829144	0.86[ASN][1000 genomes]
rs844175	0.83[ASN][1000 genomes]
rs860476	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv899078	chr12:51213433-51286750	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51228400-51235200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:51228400-51236600	Weak transcription	Gastric	stomach

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