Variant report
| Variant | rs10747863 |
|---|---|
| Chromosome Location | chr12:60430720-60430721 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10877386 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11173264 | 0.81[EUR][1000 genomes] |
| rs11173269 | 0.81[EUR][1000 genomes] |
| rs11173277 | 0.81[EUR][1000 genomes] |
| rs12296921 | 0.81[EUR][1000 genomes] |
| rs12300142 | 0.81[EUR][1000 genomes] |
| rs12303560 | 0.81[EUR][1000 genomes] |
| rs12303670 | 0.81[EUR][1000 genomes] |
| rs12310883 | 0.81[EUR][1000 genomes] |
| rs12312671 | 0.81[EUR][1000 genomes] |
| rs12316695 | 0.81[EUR][1000 genomes] |
| rs12320928 | 0.81[EUR][1000 genomes] |
| rs17123175 | 0.81[EUR][1000 genomes] |
| rs17123206 | 0.81[EUR][1000 genomes] |
| rs35551159 | 0.87[ASN][1000 genomes] |
| rs4625508 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs58884159 | 0.81[EUR][1000 genomes] |
| rs59151908 | 0.81[EUR][1000 genomes] |
| rs6581290 | 0.81[EUR][1000 genomes] |
| rs7305846 | 0.81[EUR][1000 genomes] |
| rs73108210 | 0.87[ASN][1000 genomes] |
| rs73364809 | 0.81[EUR][1000 genomes] |
| rs73364812 | 0.81[EUR][1000 genomes] |
| rs73367135 | 0.81[EUR][1000 genomes] |
| rs73367139 | 0.81[EUR][1000 genomes] |
| rs7954073 | 0.84[ASN][1000 genomes] |
| rs7954596 | 0.81[EUR][1000 genomes] |
| rs7962286 | 0.81[EUR][1000 genomes] |
| rs9325169 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv516042 | chr12:60354307-60459370 | Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv899136 | chr12:60373244-60483607 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv559103 | chr12:60383069-60483607 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60428800-60430800 | Enhancers | HUVEC | blood vessel |
