Variant report

Variant	rs10748572
Chromosome Location	chr10:93661584-93661585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93658422..93663932-chr10:93667095..93670439,6	K562	blood:
2	chr10:93661453..93663072-chrX:48379184..48381618,2	MCF-7	breast:
3	chr10:93639808..93641411-chr10:93659591..93661958,2	MCF-7	breast:
4	chr10:93660215..93662706-chr10:93684355..93686747,2	K562	blood:
5	chr10:93659769..93663294-chr10:93666942..93669408,5	K562	blood:
6	chr10:93660215..93663761-chr10:93664778..93670743,6	MCF-7	breast:
7	chr10:93660696..93663256-chr10:93667345..93669258,2	MCF-7	breast:
8	chr10:93657701..93660286-chr10:93660580..93662929,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000147155	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1770477	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1772178	1.00[AMR][1000 genomes]
rs1890897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2421807	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676812	1.00[AMR][1000 genomes]
rs2792023	1.00[AMR][1000 genomes]
rs2797642	1.00[AMR][1000 genomes]
rs3905004	1.00[AMR][1000 genomes]
rs4367860	1.00[AMR][1000 genomes]
rs7894570	1.00[AMR][1000 genomes]
rs855562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93657600-93661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:93657600-93665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93658200-93666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:93658400-93661800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:93659000-93662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93660400-93662400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:93660400-93662800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:93660400-93662800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:93660600-93663200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:93660800-93662600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:93660800-93662800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:93660800-93662800	Enhancers	Hela-S3	cervix
14	chr10:93660800-93662800	Enhancers	HUVEC	blood vessel
15	chr10:93660800-93662800	Enhancers	NHLF	lung
16	chr10:93661000-93662000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:93661000-93662200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:93661000-93662400	Enhancers	K562	blood
19	chr10:93661000-93662600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:93661000-93662600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:93661000-93662600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr10:93661000-93662600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:93661000-93662600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:93661000-93662600	Enhancers	HepG2	liver
25	chr10:93661000-93662600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:93661000-93662600	Enhancers	NHEK	skin
27	chr10:93661000-93662800	Enhancers	HMEC	breast
28	chr10:93661000-93665600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:93661000-93667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:93661000-93667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:93661200-93661600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:93661200-93661600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:93661200-93661800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:93661200-93662200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr10:93661200-93662400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:93661200-93662400	Enhancers	Stomach Mucosa	stomach
37	chr10:93661200-93662600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:93661200-93662600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:93661200-93662800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:93661200-93662800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:93661200-93663000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:93661400-93661600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:93661400-93662200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:93661400-93662200	Enhancers	HSMMtube	muscle
45	chr10:93661400-93662200	Flanking Active TSS	NH-A	brain
46	chr10:93661400-93662400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:93661400-93662400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:93661400-93662400	Flanking Active TSS	A549	lung
49	chr10:93661400-93662600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:93661400-93662600	Enhancers	Primary neutrophils fromperipheralblood	blood

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