Variant report

Variant	rs10748672
Chromosome Location	chr10:98117061-98117062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10882778	0.85[YRI][hapmap]
rs2901990	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10748672	TLL2	cis	cerebellum	SCAN
rs10748672	OPALIN	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98115000-98119000	Active TSS	Brain Anterior Caudate	brain
3	chr10:98115200-98119600	Active TSS	Brain Angular Gyrus	brain
4	chr10:98116000-98118800	Active TSS	Brain Hippocampus Middle	brain
5	chr10:98116400-98117200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr10:98116400-98118800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr10:98116600-98117600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:98116800-98117200	Enhancers	Brain Substantia Nigra	brain
9	chr10:98117000-98117200	Active TSS	Brain Cingulate Gyrus	brain
10	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
11	chr10:98117000-98134400	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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