Variant report

Variant	rs10749594
Chromosome Location	chr10:90402385-90402386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10788608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10788610	0.87[ASN][1000 genomes]
rs10887837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10887839	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10887840	1.00[JPT][hapmap]
rs10887841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10887843	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202781	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1409137	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs1555841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1769686	0.85[ASN][1000 genomes]
rs1934447	0.89[ASN][1000 genomes]
rs1980811	0.89[ASN][1000 genomes]
rs2274312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2296545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2576168	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2576178	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2765446	0.95[JPT][hapmap]
rs2765452	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs701826	0.84[ASN][1000 genomes]
rs7476392	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs750507	0.89[ASN][1000 genomes]
rs7912280	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs845133	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv551839	chr10:90334835-90422136	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90399800-90405400	Enhancers	Hela-S3	cervix
2	chr10:90402000-90403400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:90402000-90403400	Enhancers	NHDF-Ad	bronchial
4	chr10:90402000-90403600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:90402200-90402800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:90402200-90402800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:90402200-90403000	Enhancers	HMEC	breast
8	chr10:90402200-90403200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:90402200-90403400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90402200-90403400	Enhancers	NHLF	lung
11	chr10:90402200-90403600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:90402200-90403800	Enhancers	Monocytes-CD14+_RO01746	blood

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