Variant report

Variant	rs10752125
Chromosome Location	chr10:5882129-5882130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5853267..5855548-chr10:5881785..5884894,3	MCF-7	breast:
2	chr10:5857495..5859789-chr10:5881654..5883847,2	K562	blood:
3	chr10:5852473..5857853-chr10:5880942..5888645,8	MCF-7	breast:
4	chr10:5875866..5877647-chr10:5881023..5883616,2	K562	blood:
5	chr10:5876253..5877969-chr10:5881683..5883648,2	K562	blood:
6	chr10:5851570..5858995-chr10:5881654..5887342,9	K562	blood:
7	chr10:5850869..5856128-chr10:5879241..5885807,8	K562	blood:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1106038	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2380204	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv982902	chr10:5872818-5889953	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3342274	chr10:5875995-5901345	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1794948	chr10:5880066-5892545	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1795821	chr10:5880066-5893268	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1801910	chr10:5881740-5898882	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5873200-5882400	Weak transcription	Spleen	Spleen
2	chr10:5875000-5886600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:5875200-5882200	Weak transcription	Right Atrium	heart
4	chr10:5876200-5882200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:5876600-5882600	Weak transcription	Left Ventricle	heart
6	chr10:5877800-5882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:5878000-5885600	Weak transcription	K562	blood
8	chr10:5880000-5882200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:5880000-5882400	Enhancers	Primary B cells from cord blood	blood
10	chr10:5881000-5882200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:5881400-5882400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:5881600-5882200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:5881600-5882200	Active TSS	Brain Angular Gyrus	brain
14	chr10:5881600-5882200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:5881600-5882200	Enhancers	GM12878-XiMat	blood
16	chr10:5881600-5882400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:5881600-5882600	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr10:5881600-5882800	Enhancers	NHDF-Ad	bronchial
19	chr10:5881600-5883000	Enhancers	Placenta	Placenta
20	chr10:5881600-5883200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:5881800-5882400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:5882000-5882200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:5882000-5882200	Enhancers	Adipose Nuclei	Adipose
24	chr10:5882000-5882200	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:5882000-5882200	Enhancers	Brain Substantia Nigra	brain
26	chr10:5882000-5882200	Enhancers	NHLF	lung
27	chr10:5882000-5882400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:5882000-5882400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr10:5882000-5882600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:5882000-5882800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:5882000-5883000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr10:5882000-5883400	Flanking Active TSS	HepG2	liver

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