Variant report

Variant	rs10752158
Chromosome Location	chr10:5989814-5989815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:5989805-5990078	SK-N-SH	brain:	n/a	n/a
2	GATA2	chr10:5989636-5990347	SH-SY5Y	brain:	n/a	chr10:5990031-5990040 chr10:5990030-5990040 chr10:5990031-5990038 chr10:5990008-5990017
3	GATA1	chr10:5989759-5990258	PBDE	blood:	n/a	chr10:5990031-5990040 chr10:5990030-5990040 chr10:5990031-5990038 chr10:5990008-5990017
4	GATA3	chr10:5989797-5990188	SH-SY5Y	brain:	n/a	chr10:5990031-5990040 chr10:5990030-5990040 chr10:5990031-5990038 chr10:5990008-5990017

No.	Distal block	Cell Line	Cell type
1	chr10:5985856..5987611-chr10:5988496..5991234,3	MCF-7	breast:
2	chr10:5984591..5988686-chr10:5988894..5992544,7	K562	blood:
3	chr10:5989579..5992507-chr10:5992737..5995204,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232807	TF binding region
ENSG00000232807	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2146930	1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:5980000-5991000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:5980800-5991000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:5980800-5994600	Weak transcription	Gastric	stomach
7	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
8	chr10:5981000-6003600	Weak transcription	Primary T cells from cord blood	blood
9	chr10:5982800-5995000	Weak transcription	GM12878-XiMat	blood
10	chr10:5985600-5990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:5986200-5991400	Weak transcription	Right Ventricle	heart
12	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
13	chr10:5986800-5995600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:5987000-5994600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:5987200-5991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:5987200-5991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:5987200-5991000	Weak transcription	Fetal Intestine Small	intestine
18	chr10:5987600-5991000	Weak transcription	Pancreas	Pancrea
19	chr10:5987600-5991000	Weak transcription	A549	lung
20	chr10:5987600-5992400	Weak transcription	Brain Angular Gyrus	brain
21	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
22	chr10:5987800-5992400	Weak transcription	Esophagus	oesophagus
23	chr10:5987800-5993600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
25	chr10:5988000-5994000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:5988000-5995000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:5988000-6000800	Weak transcription	Colonic Mucosa	Colon
28	chr10:5988000-6001400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:5988200-5991200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:5988200-5991200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:5988200-5992200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:5988200-5993600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:5988200-5994200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:5988200-5994600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:5988200-5998600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:5988200-6001800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:5988400-5990000	Enhancers	HUVEC	blood vessel
38	chr10:5988400-5990400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:5988400-5990800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:5988400-5991000	Weak transcription	Liver	Liver
41	chr10:5988400-5991000	Weak transcription	Fetal Kidney	kidney
42	chr10:5988400-5991000	Weak transcription	NHEK	skin
43	chr10:5988400-5991200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:5988400-5991200	Weak transcription	Stomach Mucosa	stomach
45	chr10:5988400-5991400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:5988400-5992000	Weak transcription	Hela-S3	cervix
47	chr10:5988400-5992200	Weak transcription	NH-A	brain
48	chr10:5988400-5992400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:5988400-5992400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:5988400-5992400	Weak transcription	Osteobl	bone

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