Variant report

Variant	rs10752194
Chromosome Location	chr10:6114293-6114294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr10:6114108-6114890	GM10847	blood:	n/a	n/a
2	NFIC	chr10:6114106-6115001	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:6114123-6114907	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:6113728-6114799	GM12892	blood:	n/a	n/a
5	STAT5A	chr10:6114106-6114684	GM12878	blood:	n/a	chr10:6114524-6114531 chr10:6114334-6114342
6	PML	chr10:6113924-6115007	GM12878	blood:	n/a	chr10:6114607-6114615
7	RELA	chr10:6114256-6114913	GM19099	blood:	n/a	n/a
8	FOXM1	chr10:6114208-6115032	GM12878	blood:	n/a	n/a
9	ELF1	chr10:6113838-6114366	GM12878	blood:	n/a	n/a
10	MTA3	chr10:6113247-6114948	GM12878	blood:	n/a	n/a
11	BCLAF1	chr10:6114264-6114899	GM12878	blood:	n/a	n/a
12	ATF2	chr10:6114275-6115035	GM12878	blood:	n/a	n/a
13	CREB1	chr10:6114249-6115185	GM12878	blood:	n/a	n/a
14	NFIC	chr10:6114188-6115153	GM12878	blood:	n/a	n/a
15	MTA3	chr10:6114155-6114958	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000214015	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1924138	0.83[ASN][1000 genomes]
rs706779	0.86[ASN][1000 genomes]
rs7079460	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6106800-6114800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:6107200-6114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:6107200-6115000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:6107400-6114800	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:6109400-6115400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
8	chr10:6111000-6114600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:6111000-6115000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:6111200-6114800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:6111200-6115000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:6111200-6115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:6111400-6115200	Enhancers	Primary B cells from cord blood	blood
14	chr10:6111600-6114400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:6111600-6115000	Enhancers	Primary T cells from cord blood	blood
16	chr10:6111600-6115000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:6111600-6115200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:6111600-6115200	Enhancers	Dnd41	blood
19	chr10:6112200-6114400	Enhancers	Lung	lung
20	chr10:6112200-6114800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:6112400-6114600	Enhancers	Adipose Nuclei	Adipose
22	chr10:6112400-6114800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:6112600-6114400	Enhancers	Spleen	Spleen
24	chr10:6112800-6114400	Enhancers	Left Ventricle	heart
25	chr10:6113000-6115000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:6113000-6115200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:6113400-6114600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr10:6113600-6114600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:6113600-6115000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr10:6113600-6115000	Enhancers	Duodenum Mucosa	Duodenum
31	chr10:6113800-6115200	Flanking Active TSS	GM12878-XiMat	blood
32	chr10:6114000-6114400	Enhancers	Fetal Muscle Leg	muscle
33	chr10:6114000-6115000	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr10:6114000-6116600	Weak transcription	Right Atrium	heart
35	chr10:6114200-6114400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:6114200-6114400	Enhancers	Right Ventricle	heart
37	chr10:6114200-6114400	Enhancers	Stomach Mucosa	stomach
38	chr10:6114200-6114400	Flanking Active TSS	Thymus	Thymus
39	chr10:6114200-6114600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:6114200-6114800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:6114200-6117000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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