Variant report

Variant	rs10752971
Chromosome Location	chr1:186720057-186720058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186719442..186721469-chr1:186796069..186797645,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10737269	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10752973	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10752974	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10798055	0.91[EUR][1000 genomes]
rs10798057	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10911922	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1158042	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1158043	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12029765	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12116711	0.85[EUR][1000 genomes]
rs12117451	0.89[EUR][1000 genomes]
rs12119919	0.89[EUR][1000 genomes]
rs12144220	0.89[EUR][1000 genomes]
rs12239324	0.86[ASN][1000 genomes]
rs1980454	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205951	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223329	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223330	0.92[EUR][1000 genomes]
rs4650701	0.92[EUR][1000 genomes]
rs56337220	0.86[ASN][1000 genomes]
rs6425049	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6660635	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6663605	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6688484	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6692679	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6696144	0.86[ASN][1000 genomes]
rs74134991	0.86[ASN][1000 genomes]
rs74134997	0.86[ASN][1000 genomes]
rs7418312	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516460	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7523981	0.89[EUR][1000 genomes]
rs7532307	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7554410	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7555275	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs766400	0.91[EUR][1000 genomes]
rs964570	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv466261	chr1:186652395-186742947	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv548405	chr1:186652395-186742947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186715600-186730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:186718600-186720600	Enhancers	NHEK	skin
3	chr1:186718800-186720400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:186718800-186720400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:186718800-186720400	Enhancers	HMEC	breast
6	chr1:186718800-186720800	Enhancers	Hela-S3	cervix
7	chr1:186719000-186720200	Enhancers	NHDF-Ad	bronchial
8	chr1:186719000-186720600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:186720000-186722000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:186720000-186722200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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