Variant report

Variant	rs10753412
Chromosome Location	chr1:226282822-226282823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10915943	0.84[EUR][1000 genomes]
rs4369199	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083551	0.84[AMR][1000 genomes]
rs73083553	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv873232	chr1:226242772-226375267	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	esv1792510	chr1:226277560-226323824	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226271800-226286200	Weak transcription	Ovary	ovary
2	chr1:226271800-226288000	Weak transcription	Right Atrium	heart
3	chr1:226271800-226288400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:226272000-226285400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:226272000-226287800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:226272000-226288200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:226277400-226284000	Weak transcription	NHEK	skin
8	chr1:226278800-226287600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:226281200-226295000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:226281400-226285400	Weak transcription	K562	blood
11	chr1:226281600-226284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links