Variant report

Variant	rs1075364
Chromosome Location	chr1:225815635-225815636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225812132..225816261-chr1:225840645..225843021,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154380	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2639703	0.81[LWK][hapmap]
rs2769689	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2840959	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2840966	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840967	0.82[LWK][hapmap]
rs2840968	0.81[LWK][hapmap]
rs508817	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6701032	0.83[EUR][1000 genomes]
rs7514094	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1075364	LBR	cis	Esophagus Muscularis	GTEx

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225760000-225820600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:225781000-225825400	Weak transcription	Fetal Stomach	stomach
3	chr1:225806200-225817600	Weak transcription	Fetal Brain Female	brain
4	chr1:225807200-225820400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:225808200-225818400	Weak transcription	Fetal Brain Male	brain
6	chr1:225809800-225837800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:225810000-225825400	Weak transcription	NHEK	skin
8	chr1:225812400-225815800	Enhancers	Fetal Lung	lung
9	chr1:225812400-225816000	Enhancers	Ovary	ovary
10	chr1:225812400-225816000	Enhancers	Stomach Smooth Muscle	stomach
11	chr1:225812600-225816200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr1:225812600-225816200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr1:225812600-225816400	Enhancers	Colon Smooth Muscle	Colon
14	chr1:225812800-225824400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:225812800-225825000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:225813200-225815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:225813200-225816000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:225813200-225816400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:225813200-225816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:225813200-225816400	Enhancers	Rectal Smooth Muscle	rectum
21	chr1:225813400-225824800	Weak transcription	Lung	lung
22	chr1:225813600-225815800	Enhancers	Brain Substantia Nigra	brain
23	chr1:225813600-225816000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:225813600-225837600	Weak transcription	HUVEC	blood vessel
25	chr1:225813800-225815800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:225813800-225815800	Enhancers	Left Ventricle	heart
27	chr1:225813800-225815800	Enhancers	Stomach Mucosa	stomach
28	chr1:225813800-225816000	Enhancers	Fetal Intestine Small	intestine
29	chr1:225813800-225816000	Enhancers	Fetal Muscle Leg	muscle
30	chr1:225813800-225816200	Enhancers	Brain Cingulate Gyrus	brain
31	chr1:225813800-225816200	Enhancers	Brain Hippocampus Middle	brain
32	chr1:225813800-225817200	Enhancers	Psoas Muscle	Psoas
33	chr1:225813800-225838600	Weak transcription	HMEC	breast
34	chr1:225814000-225815800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:225814000-225815800	Enhancers	Fetal Intestine Large	intestine
36	chr1:225814000-225816000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:225814000-225816200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr1:225814000-225816800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:225814200-225815800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:225814200-225816000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr1:225814200-225818800	Weak transcription	Gastric	stomach
42	chr1:225814200-225819600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr1:225814400-225815800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:225814400-225816200	Enhancers	Fetal Heart	heart
45	chr1:225814400-225816400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:225814400-225816400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr1:225814400-225820400	Weak transcription	HSMM	muscle
48	chr1:225814400-225825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr1:225814400-225825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:225814600-225816200	Enhancers	HUES48 Cell Line	embryonic stem cell

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