Variant report

Variant	rs10753702
Chromosome Location	chr1:166051587-166051588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10918369	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs4074897	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs6426968	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs6698285	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs6698973	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs7513325	0.81[JPT][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10753702	TBX19	cis	parietal	SCAN
rs10753702	CD48	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166039200-166055400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166049400-166051800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:166049600-166051800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:166049800-166052000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:166050000-166051600	Enhancers	Stomach Smooth Muscle	stomach
7	chr1:166050000-166052200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:166050600-166053000	Weak transcription	GM12878-XiMat	blood
9	chr1:166050600-166055400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:166050800-166052600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:166051000-166051600	Enhancers	Dnd41	blood
12	chr1:166051000-166052600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:166051000-166059400	Weak transcription	Right Atrium	heart
14	chr1:166051000-166059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:166051200-166053200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:166051200-166053800	Weak transcription	Spleen	Spleen
17	chr1:166051200-166055400	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:166051200-166057000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:166051200-166058800	Weak transcription	Adipose Nuclei	Adipose
20	chr1:166051200-166059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:166051200-166060000	Weak transcription	Right Ventricle	heart
22	chr1:166051400-166054800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea

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