Variant report

Variant	rs10755153
Chromosome Location	chr4:7474688-7474689
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10755154	0.98[EUR][1000 genomes]
rs10804997	0.89[EUR][1000 genomes]
rs11930924	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11934982	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11939661	0.80[EUR][1000 genomes]
rs11939663	0.80[EUR][1000 genomes]
rs11945406	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13353623	0.98[EUR][1000 genomes]
rs16840376	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs28386917	0.81[EUR][1000 genomes]
rs28685600	0.81[EUR][1000 genomes]
rs4330350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623001	0.98[EUR][1000 genomes]
rs4689128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62277627	0.84[EUR][1000 genomes]
rs62277629	0.84[EUR][1000 genomes]
rs62277631	0.82[AMR][1000 genomes]
rs62277632	0.82[AMR][1000 genomes]
rs62277634	0.82[AMR][1000 genomes]
rs62277646	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277647	0.89[EUR][1000 genomes]
rs62277648	0.91[EUR][1000 genomes]
rs62277650	0.91[EUR][1000 genomes]
rs62277655	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7654768	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7660150	0.98[EUR][1000 genomes]
rs7660550	0.88[EUR][1000 genomes]
rs7667521	0.81[EUR][1000 genomes]
rs7668114	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7675681	1.00[CHB][hapmap]
rs7675834	0.84[EUR][1000 genomes]
rs7676849	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677784	0.98[EUR][1000 genomes]
rs9647417	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv469758	chr4:7370083-7546250	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878560	chr4:7402284-7475114	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878561	chr4:7402284-7544610	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv878563	chr4:7420785-7529367	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv878564	chr4:7421007-7535214	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv878566	chr4:7456717-7529367	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv878567	chr4:7456717-7544610	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv520804	chr4:7473863-7475114	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7471600-7480600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:7472400-7475000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7473200-7476000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:7473400-7475400	Enhancers	Brain Germinal Matrix	brain
5	chr4:7473600-7475200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr4:7473600-7475200	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr4:7473600-7475400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:7473800-7475200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:7473800-7475200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:7473800-7475400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:7474000-7474800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:7474000-7474800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:7474000-7474800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:7474000-7475000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:7474200-7475000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:7474600-7475000	Enhancers	Fetal Kidney	kidney

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