Variant report

Variant	rs10756604
Chromosome Location	chr9:14692676-14692677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14690708..14693231-chr9:14713433..14715842,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10810210	0.88[ASN][1000 genomes]
rs10810219	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810220	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961650	0.88[ASN][1000 genomes]
rs10961657	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10961658	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961669	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4278237	0.87[ASN][1000 genomes]
rs4740585	0.97[ASN][1000 genomes]
rs62539798	0.89[ASN][1000 genomes]
rs7032619	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv892605	chr9:14585052-14709151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv892606	chr9:14588049-14697022	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892609	chr9:14589173-14694302	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2752921	chr9:14593749-14694372	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv892612	chr9:14654900-14694302	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv892613	chr9:14657139-14694302	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv6482	chr9:14673695-14718568	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14691400-14694000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:14691600-14694000	Active TSS	GM12878-XiMat	blood
3	chr9:14692000-14692800	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr9:14692000-14692800	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr9:14692000-14692800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr9:14692000-14693000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:14692000-14693000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:14692000-14693600	Active TSS	Brain Germinal Matrix	brain
9	chr9:14692200-14692800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr9:14692200-14692800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:14692200-14692800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:14692200-14692800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr9:14692200-14692800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:14692200-14692800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr9:14692200-14692800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr9:14692200-14692800	Flanking Active TSS	Fetal Brain Male	brain
17	chr9:14692200-14692800	Flanking Active TSS	A549	lung
18	chr9:14692200-14692800	Flanking Active TSS	Dnd41	blood
19	chr9:14692200-14692800	Flanking Active TSS	NHEK	skin
20	chr9:14692200-14693000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr9:14692200-14693400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:14692200-14693400	Active TSS	HMEC	breast
23	chr9:14692200-14693600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr9:14692200-14693600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:14692200-14693800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:14692200-14693800	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr9:14692200-14693800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr9:14692200-14693800	Active TSS	Fetal Brain Female	brain
29	chr9:14692200-14693800	Active TSS	NHLF	lung
30	chr9:14692200-14694200	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr9:14692200-14694200	Active TSS	Stomach Smooth Muscle	stomach
32	chr9:14692400-14692800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:14692400-14692800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr9:14692400-14692800	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr9:14692400-14692800	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr9:14692400-14692800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr9:14692400-14692800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr9:14692400-14692800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr9:14692400-14692800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr9:14692400-14692800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:14692400-14692800	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr9:14692400-14692800	Flanking Active TSS	Liver	Liver
43	chr9:14692400-14692800	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr9:14692400-14692800	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr9:14692400-14692800	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr9:14692400-14692800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr9:14692400-14692800	Flanking Active TSS	Fetal Lung	lung
48	chr9:14692400-14692800	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr9:14692400-14692800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr9:14692400-14692800	Flanking Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links