Variant report

Variant	rs10756811
Chromosome Location	chr9:16768265-16768266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10756812	0.82[CEU][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810616	0.90[CEU][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810619	0.95[CEU][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[ASN][1000 genomes]
rs10810625	0.83[CHB][hapmap]
rs10810628	0.81[CEU][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes]
rs10810629	0.81[CEU][hapmap];0.86[AMR][1000 genomes]
rs10962570	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10962572	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962573	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962579	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10962581	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10962582	0.95[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10962585	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962590	0.87[AMR][1000 genomes]
rs11793056	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11793537	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11795031	0.81[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes]
rs12343424	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12344347	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12344799	0.86[AMR][1000 genomes]
rs12353453	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13290007	0.81[CEU][hapmap]
rs13294647	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13299347	0.81[EUR][1000 genomes]
rs1330299	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4623533	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56343038	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7860932	0.83[CHB][hapmap]
rs944207	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9987471	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16774800	Weak transcription	Osteobl	bone
2	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:16758600-16769200	Weak transcription	Ovary	ovary
5	chr9:16762600-16786800	Weak transcription	NHLF	lung
6	chr9:16765200-16768400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:16766400-16769200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:16766400-16771800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:16767000-16775000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:16767200-16768400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:16767200-16769200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:16767200-16770200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:16767200-16771200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16767200-16778200	Weak transcription	NHDF-Ad	bronchial
15	chr9:16767400-16769000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:16767400-16769400	Weak transcription	Fetal Stomach	stomach
17	chr9:16767600-16769400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:16767600-16771000	Weak transcription	Fetal Lung	lung
19	chr9:16767600-16795400	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:16768000-16795000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:16768200-16768400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:16768200-16769200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:16768200-16771800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links