Variant report

Variant	rs10759661
Chromosome Location	chr9:116620933-116620934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10981935	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10981958	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7035099	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116619400-116621000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:116619600-116621200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:116619800-116621000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:116619800-116621200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:116619800-116621400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116620000-116621200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:116620000-116621200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:116620000-116621200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:116620000-116621400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:116620000-116621400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:116620000-116621400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:116620000-116621400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:116620200-116621200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:116620200-116621400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:116620600-116621400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:116620800-116621000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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